miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29068 3' -56.4 NC_006146.1 + 48345 0.67 0.858466
Target:  5'- --cAGGCGUCCAGuCUGG-CCaGCggGCCg -3'
miRNA:   3'- acaUCUGCAGGUC-GACUaGGcCG--CGG- -5'
29068 3' -56.4 NC_006146.1 + 50010 0.69 0.791929
Target:  5'- --gAGGCGaUCCGGUUGAUgcagCCGGgGUCg -3'
miRNA:   3'- acaUCUGC-AGGUCGACUA----GGCCgCGG- -5'
29068 3' -56.4 NC_006146.1 + 51933 0.66 0.900253
Target:  5'- --cGGGCGgccCCGGUgcGGUCUGcGCGCCa -3'
miRNA:   3'- acaUCUGCa--GGUCGa-CUAGGC-CGCGG- -5'
29068 3' -56.4 NC_006146.1 + 53359 0.69 0.80082
Target:  5'- cGU-GAgGUCUuGGCUGGcCCGGCGCUu -3'
miRNA:   3'- aCAuCUgCAGG-UCGACUaGGCCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 54614 0.66 0.912415
Target:  5'- --gGGGCGccaUCCGGCcgccucucUGGUCCGGUGgCu -3'
miRNA:   3'- acaUCUGC---AGGUCG--------ACUAGGCCGCgG- -5'
29068 3' -56.4 NC_006146.1 + 56228 0.67 0.85618
Target:  5'- --gAGcCGUCCAGCgGGUCCgcgggggcggaggcGGgGCCg -3'
miRNA:   3'- acaUCuGCAGGUCGaCUAGG--------------CCgCGG- -5'
29068 3' -56.4 NC_006146.1 + 56751 0.68 0.850775
Target:  5'- --gGGACGUCCGGggcCUGAUCgCGGaGCa -3'
miRNA:   3'- acaUCUGCAGGUC---GACUAG-GCCgCGg -5'
29068 3' -56.4 NC_006146.1 + 57896 0.73 0.540537
Target:  5'- gGUGGAacggcgccuUGUCCAggacaugcagagggcGCUGG-CCGGCGCCg -3'
miRNA:   3'- aCAUCU---------GCAGGU---------------CGACUaGGCCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 59805 0.66 0.906448
Target:  5'- --cAGAgcUCCAGCUGAUUgagGGCGUCg -3'
miRNA:   3'- acaUCUgcAGGUCGACUAGg--CCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 60052 0.74 0.517191
Target:  5'- ----aGCGUCCcuCUGAUCgGGCGCCg -3'
miRNA:   3'- acaucUGCAGGucGACUAGgCCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 61125 0.66 0.923656
Target:  5'- -aUGGAUGUCCAcGUUGAcaaCCaGGUGCUg -3'
miRNA:   3'- acAUCUGCAGGU-CGACUa--GG-CCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 68108 0.79 0.273624
Target:  5'- gGUGGGCGgCCAGCcGGUCCgcggugagcGGCGCCa -3'
miRNA:   3'- aCAUCUGCaGGUCGaCUAGG---------CCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 71201 0.68 0.826571
Target:  5'- aGUAGAaGUCCAGCgGggCCGuaGCg -3'
miRNA:   3'- aCAUCUgCAGGUCGaCuaGGCcgCGg -5'
29068 3' -56.4 NC_006146.1 + 74619 0.72 0.606269
Target:  5'- --cAGcACGUgCAGcCUGAUgCGGCGCCc -3'
miRNA:   3'- acaUC-UGCAgGUC-GACUAgGCCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 84521 0.7 0.706643
Target:  5'- --cGGACGUCguGCcGGUacaGGCGCCg -3'
miRNA:   3'- acaUCUGCAGguCGaCUAgg-CCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 97440 0.71 0.683794
Target:  5'- gGUGGAUGgaaccuccucuucuUCCAuGUUGucAUCCGGUGCCa -3'
miRNA:   3'- aCAUCUGC--------------AGGU-CGAC--UAGGCCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 98320 0.67 0.873246
Target:  5'- cGUGGcCGUCUGGCacgGggCCGGgCGCg -3'
miRNA:   3'- aCAUCuGCAGGUCGa--CuaGGCC-GCGg -5'
29068 3' -56.4 NC_006146.1 + 99878 1.12 0.00205
Target:  5'- aUGUAGACGUCCAGCUGAUCCGGCGCCu -3'
miRNA:   3'- -ACAUCUGCAGGUCGACUAGGCCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 102560 0.71 0.68679
Target:  5'- --gAGGCGUCCAGCagcaGGUCCGa-GCCg -3'
miRNA:   3'- acaUCUGCAGGUCGa---CUAGGCcgCGG- -5'
29068 3' -56.4 NC_006146.1 + 112361 0.68 0.809563
Target:  5'- aUGUAGGcCG-CCAcGCUGA-CCGGcCGCUu -3'
miRNA:   3'- -ACAUCU-GCaGGU-CGACUaGGCC-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.