miRNA display CGI


Results 41 - 60 of 71 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29068 3' -56.4 NC_006146.1 + 112912 0.67 0.893831
Target:  5'- --cGGGCcUCCAGCUcGUCCugguGCGCCu -3'
miRNA:   3'- acaUCUGcAGGUCGAcUAGGc---CGCGG- -5'
29068 3' -56.4 NC_006146.1 + 114224 0.69 0.791929
Target:  5'- gGUAG-CaGcCCGGC-GAUCCGGCGUUg -3'
miRNA:   3'- aCAUCuG-CaGGUCGaCUAGGCCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 114296 0.68 0.818149
Target:  5'- -aUGGACG-CCGGCgagGAgaCCGGCGgCg -3'
miRNA:   3'- acAUCUGCaGGUCGa--CUa-GGCCGCgG- -5'
29068 3' -56.4 NC_006146.1 + 121146 0.67 0.887187
Target:  5'- ---cGGCGUCUGGgcCUGggCCGcGCGCCc -3'
miRNA:   3'- acauCUGCAGGUC--GACuaGGC-CGCGG- -5'
29068 3' -56.4 NC_006146.1 + 123549 0.66 0.900252
Target:  5'- --gAGAcCGUCgCAGaCUGGaaaCGGCGCCu -3'
miRNA:   3'- acaUCU-GCAG-GUC-GACUag-GCCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 128586 0.69 0.791929
Target:  5'- --cGGACGacuacgaCCGGCUGuacuuUCUGGCGCUg -3'
miRNA:   3'- acaUCUGCa------GGUCGACu----AGGCCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 131554 0.66 0.923656
Target:  5'- gGUGGugGgacgCCGGgUGGUuuGGUGaCUg -3'
miRNA:   3'- aCAUCugCa---GGUCgACUAggCCGC-GG- -5'
29068 3' -56.4 NC_006146.1 + 137753 0.68 0.842092
Target:  5'- -cUGGGgGUCCGcucguccGCUGGUCCGGUccggguggGCCu -3'
miRNA:   3'- acAUCUgCAGGU-------CGACUAGGCCG--------CGG- -5'
29068 3' -56.4 NC_006146.1 + 137812 0.68 0.842891
Target:  5'- --cGGGgGUCC-GCcGGUCCGGUGCa -3'
miRNA:   3'- acaUCUgCAGGuCGaCUAGGCCGCGg -5'
29068 3' -56.4 NC_006146.1 + 141520 0.69 0.764449
Target:  5'- aGUGGACGggCCugggaGGCUGGUuCUGGgGCUg -3'
miRNA:   3'- aCAUCUGCa-GG-----UCGACUA-GGCCgCGG- -5'
29068 3' -56.4 NC_006146.1 + 144598 0.69 0.764449
Target:  5'- aGUGGACGggCCugggaGGCUGGUuCUGGgGCUg -3'
miRNA:   3'- aCAUCUGCa-GG-----UCGACUA-GGCCgCGG- -5'
29068 3' -56.4 NC_006146.1 + 149409 0.67 0.865959
Target:  5'- gGUAGACGgCCAGgUGAggcaUCUgGGUGCUc -3'
miRNA:   3'- aCAUCUGCaGGUCgACU----AGG-CCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 150753 0.69 0.764449
Target:  5'- aGUGGACGggCCugggaGGCUGGUuCUGGgGCUg -3'
miRNA:   3'- aCAUCUGCa-GG-----UCGACUA-GGCCgCGG- -5'
29068 3' -56.4 NC_006146.1 + 153831 0.69 0.764449
Target:  5'- aGUGGACGggCCugggaGGCUGGUuCUGGgGCUg -3'
miRNA:   3'- aCAUCUGCa-GG-----UCGACUA-GGCCgCGG- -5'
29068 3' -56.4 NC_006146.1 + 156031 0.7 0.726251
Target:  5'- cUGUAGuuGUCCAGCUcc-CUGGCuGCCc -3'
miRNA:   3'- -ACAUCugCAGGUCGAcuaGGCCG-CGG- -5'
29068 3' -56.4 NC_006146.1 + 156909 0.69 0.764449
Target:  5'- aGUGGACGggCCugggaGGCUGGUuCUGGgGCUg -3'
miRNA:   3'- aCAUCUGCa-GG-----UCGACUA-GGCCgCGG- -5'
29068 3' -56.4 NC_006146.1 + 157252 0.66 0.923656
Target:  5'- --aGGugG-CC-GCUGccuguGUCCGGCGCUu -3'
miRNA:   3'- acaUCugCaGGuCGAC-----UAGGCCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 159952 0.68 0.826571
Target:  5'- cGUAGACGUCCcuguGGUagGAggUGGCGCg -3'
miRNA:   3'- aCAUCUGCAGG----UCGa-CUagGCCGCGg -5'
29068 3' -56.4 NC_006146.1 + 160153 0.74 0.507582
Target:  5'- aGUAGAUGUagccgcauggccCCGGCUGGcUCUGGCuGCCc -3'
miRNA:   3'- aCAUCUGCA------------GGUCGACU-AGGCCG-CGG- -5'
29068 3' -56.4 NC_006146.1 + 167255 0.67 0.893831
Target:  5'- -cUGGAUGUCgGGgaGGgcCCGGgGCCg -3'
miRNA:   3'- acAUCUGCAGgUCgaCUa-GGCCgCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.