miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29068 3' -56.4 NC_006146.1 + 170123 0.66 0.911829
Target:  5'- cGgcgGGGCGUCCcgucgucacgcucGGCUGcacgcgcggCGGCGCCg -3'
miRNA:   3'- aCa--UCUGCAGG-------------UCGACuag------GCCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 170080 0.75 0.460768
Target:  5'- cGUggGGAUGgCCGGCggGAggggCCGGCGCCg -3'
miRNA:   3'- aCA--UCUGCaGGUCGa-CUa---GGCCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 170051 0.67 0.893831
Target:  5'- -cUGGAUGUCgGGgaGGgcCCGGgGCCg -3'
miRNA:   3'- acAUCUGCAGgUCgaCUa-GGCCgCGG- -5'
29068 3' -56.4 NC_006146.1 + 169192 0.66 0.911829
Target:  5'- cGgcgGGGCGUCCcgucgucacgcucGGCUGcacgcgcggCGGCGCCg -3'
miRNA:   3'- aCa--UCUGCAGG-------------UCGACuag------GCCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 169148 0.74 0.507582
Target:  5'- cGUggGGAUGgCCGGCggGAggggCCGGCGCCu -3'
miRNA:   3'- aCA--UCUGCaGGUCGa-CUa---GGCCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 169119 0.67 0.893831
Target:  5'- -cUGGAUGUCgGGgaGGgcCCGGgGCCg -3'
miRNA:   3'- acAUCUGCAGgUCgaCUa-GGCCgCGG- -5'
29068 3' -56.4 NC_006146.1 + 168260 0.66 0.911829
Target:  5'- cGgcgGGGCGUCCcgucgucacgcucGGCUGcacgcgcggCGGCGCCg -3'
miRNA:   3'- aCa--UCUGCAGG-------------UCGACuag------GCCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 168216 0.74 0.507582
Target:  5'- cGUggGGAUGgCCGGCggGAggggCCGGCGCCu -3'
miRNA:   3'- aCA--UCUGCaGGUCGa-CUa---GGCCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 168187 0.67 0.893831
Target:  5'- -cUGGAUGUCgGGgaGGgcCCGGgGCCg -3'
miRNA:   3'- acAUCUGCAGgUCgaCUa-GGCCgCGG- -5'
29068 3' -56.4 NC_006146.1 + 167328 0.66 0.911829
Target:  5'- cGgcgGGGCGUCCcgucgucacgcucGGCUGcacgcgcggCGGCGCCg -3'
miRNA:   3'- aCa--UCUGCAGG-------------UCGACuag------GCCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 167284 0.74 0.507582
Target:  5'- cGUggGGAUGgCCGGCggGAggggCCGGCGCCu -3'
miRNA:   3'- aCA--UCUGCaGGUCGa-CUa---GGCCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 167255 0.67 0.893831
Target:  5'- -cUGGAUGUCgGGgaGGgcCCGGgGCCg -3'
miRNA:   3'- acAUCUGCAGgUCgaCUa-GGCCgCGG- -5'
29068 3' -56.4 NC_006146.1 + 160153 0.74 0.507582
Target:  5'- aGUAGAUGUagccgcauggccCCGGCUGGcUCUGGCuGCCc -3'
miRNA:   3'- aCAUCUGCA------------GGUCGACU-AGGCCG-CGG- -5'
29068 3' -56.4 NC_006146.1 + 159952 0.68 0.826571
Target:  5'- cGUAGACGUCCcuguGGUagGAggUGGCGCg -3'
miRNA:   3'- aCAUCUGCAGG----UCGa-CUagGCCGCGg -5'
29068 3' -56.4 NC_006146.1 + 157252 0.66 0.923656
Target:  5'- --aGGugG-CC-GCUGccuguGUCCGGCGCUu -3'
miRNA:   3'- acaUCugCaGGuCGAC-----UAGGCCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 156909 0.69 0.764449
Target:  5'- aGUGGACGggCCugggaGGCUGGUuCUGGgGCUg -3'
miRNA:   3'- aCAUCUGCa-GG-----UCGACUA-GGCCgCGG- -5'
29068 3' -56.4 NC_006146.1 + 156031 0.7 0.726251
Target:  5'- cUGUAGuuGUCCAGCUcc-CUGGCuGCCc -3'
miRNA:   3'- -ACAUCugCAGGUCGAcuaGGCCG-CGG- -5'
29068 3' -56.4 NC_006146.1 + 153831 0.69 0.764449
Target:  5'- aGUGGACGggCCugggaGGCUGGUuCUGGgGCUg -3'
miRNA:   3'- aCAUCUGCa-GG-----UCGACUA-GGCCgCGG- -5'
29068 3' -56.4 NC_006146.1 + 150753 0.69 0.764449
Target:  5'- aGUGGACGggCCugggaGGCUGGUuCUGGgGCUg -3'
miRNA:   3'- aCAUCUGCa-GG-----UCGACUA-GGCCgCGG- -5'
29068 3' -56.4 NC_006146.1 + 149409 0.67 0.865959
Target:  5'- gGUAGACGgCCAGgUGAggcaUCUgGGUGCUc -3'
miRNA:   3'- aCAUCUGCaGGUCgACU----AGG-CCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.