Results 21 - 40 of 71 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29068 | 3' | -56.4 | NC_006146.1 | + | 144598 | 0.69 | 0.764449 |
Target: 5'- aGUGGACGggCCugggaGGCUGGUuCUGGgGCUg -3' miRNA: 3'- aCAUCUGCa-GG-----UCGACUA-GGCCgCGG- -5' |
|||||||
29068 | 3' | -56.4 | NC_006146.1 | + | 141520 | 0.69 | 0.764449 |
Target: 5'- aGUGGACGggCCugggaGGCUGGUuCUGGgGCUg -3' miRNA: 3'- aCAUCUGCa-GG-----UCGACUA-GGCCgCGG- -5' |
|||||||
29068 | 3' | -56.4 | NC_006146.1 | + | 137812 | 0.68 | 0.842891 |
Target: 5'- --cGGGgGUCC-GCcGGUCCGGUGCa -3' miRNA: 3'- acaUCUgCAGGuCGaCUAGGCCGCGg -5' |
|||||||
29068 | 3' | -56.4 | NC_006146.1 | + | 137753 | 0.68 | 0.842092 |
Target: 5'- -cUGGGgGUCCGcucguccGCUGGUCCGGUccggguggGCCu -3' miRNA: 3'- acAUCUgCAGGU-------CGACUAGGCCG--------CGG- -5' |
|||||||
29068 | 3' | -56.4 | NC_006146.1 | + | 131554 | 0.66 | 0.923656 |
Target: 5'- gGUGGugGgacgCCGGgUGGUuuGGUGaCUg -3' miRNA: 3'- aCAUCugCa---GGUCgACUAggCCGC-GG- -5' |
|||||||
29068 | 3' | -56.4 | NC_006146.1 | + | 128586 | 0.69 | 0.791929 |
Target: 5'- --cGGACGacuacgaCCGGCUGuacuuUCUGGCGCUg -3' miRNA: 3'- acaUCUGCa------GGUCGACu----AGGCCGCGG- -5' |
|||||||
29068 | 3' | -56.4 | NC_006146.1 | + | 123549 | 0.66 | 0.900252 |
Target: 5'- --gAGAcCGUCgCAGaCUGGaaaCGGCGCCu -3' miRNA: 3'- acaUCU-GCAG-GUC-GACUag-GCCGCGG- -5' |
|||||||
29068 | 3' | -56.4 | NC_006146.1 | + | 121146 | 0.67 | 0.887187 |
Target: 5'- ---cGGCGUCUGGgcCUGggCCGcGCGCCc -3' miRNA: 3'- acauCUGCAGGUC--GACuaGGC-CGCGG- -5' |
|||||||
29068 | 3' | -56.4 | NC_006146.1 | + | 114296 | 0.68 | 0.818149 |
Target: 5'- -aUGGACG-CCGGCgagGAgaCCGGCGgCg -3' miRNA: 3'- acAUCUGCaGGUCGa--CUa-GGCCGCgG- -5' |
|||||||
29068 | 3' | -56.4 | NC_006146.1 | + | 114224 | 0.69 | 0.791929 |
Target: 5'- gGUAG-CaGcCCGGC-GAUCCGGCGUUg -3' miRNA: 3'- aCAUCuG-CaGGUCGaCUAGGCCGCGG- -5' |
|||||||
29068 | 3' | -56.4 | NC_006146.1 | + | 112912 | 0.67 | 0.893831 |
Target: 5'- --cGGGCcUCCAGCUcGUCCugguGCGCCu -3' miRNA: 3'- acaUCUGcAGGUCGAcUAGGc---CGCGG- -5' |
|||||||
29068 | 3' | -56.4 | NC_006146.1 | + | 112361 | 0.68 | 0.809563 |
Target: 5'- aUGUAGGcCG-CCAcGCUGA-CCGGcCGCUu -3' miRNA: 3'- -ACAUCU-GCaGGU-CGACUaGGCC-GCGG- -5' |
|||||||
29068 | 3' | -56.4 | NC_006146.1 | + | 102560 | 0.71 | 0.68679 |
Target: 5'- --gAGGCGUCCAGCagcaGGUCCGa-GCCg -3' miRNA: 3'- acaUCUGCAGGUCGa---CUAGGCcgCGG- -5' |
|||||||
29068 | 3' | -56.4 | NC_006146.1 | + | 99878 | 1.12 | 0.00205 |
Target: 5'- aUGUAGACGUCCAGCUGAUCCGGCGCCu -3' miRNA: 3'- -ACAUCUGCAGGUCGACUAGGCCGCGG- -5' |
|||||||
29068 | 3' | -56.4 | NC_006146.1 | + | 98320 | 0.67 | 0.873246 |
Target: 5'- cGUGGcCGUCUGGCacgGggCCGGgCGCg -3' miRNA: 3'- aCAUCuGCAGGUCGa--CuaGGCC-GCGg -5' |
|||||||
29068 | 3' | -56.4 | NC_006146.1 | + | 97440 | 0.71 | 0.683794 |
Target: 5'- gGUGGAUGgaaccuccucuucuUCCAuGUUGucAUCCGGUGCCa -3' miRNA: 3'- aCAUCUGC--------------AGGU-CGAC--UAGGCCGCGG- -5' |
|||||||
29068 | 3' | -56.4 | NC_006146.1 | + | 84521 | 0.7 | 0.706643 |
Target: 5'- --cGGACGUCguGCcGGUacaGGCGCCg -3' miRNA: 3'- acaUCUGCAGguCGaCUAgg-CCGCGG- -5' |
|||||||
29068 | 3' | -56.4 | NC_006146.1 | + | 74619 | 0.72 | 0.606269 |
Target: 5'- --cAGcACGUgCAGcCUGAUgCGGCGCCc -3' miRNA: 3'- acaUC-UGCAgGUC-GACUAgGCCGCGG- -5' |
|||||||
29068 | 3' | -56.4 | NC_006146.1 | + | 71201 | 0.68 | 0.826571 |
Target: 5'- aGUAGAaGUCCAGCgGggCCGuaGCg -3' miRNA: 3'- aCAUCUgCAGGUCGaCuaGGCcgCGg -5' |
|||||||
29068 | 3' | -56.4 | NC_006146.1 | + | 68108 | 0.79 | 0.273624 |
Target: 5'- gGUGGGCGgCCAGCcGGUCCgcggugagcGGCGCCa -3' miRNA: 3'- aCAUCUGCaGGUCGaCUAGG---------CCGCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home