miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29068 3' -56.4 NC_006146.1 + 99878 1.12 0.00205
Target:  5'- aUGUAGACGUCCAGCUGAUCCGGCGCCu -3'
miRNA:   3'- -ACAUCUGCAGGUCGACUAGGCCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 159952 0.68 0.826571
Target:  5'- cGUAGACGUCCcuguGGUagGAggUGGCGCg -3'
miRNA:   3'- aCAUCUGCAGG----UCGa-CUagGCCGCGg -5'
29068 3' -56.4 NC_006146.1 + 137753 0.68 0.842092
Target:  5'- -cUGGGgGUCCGcucguccGCUGGUCCGGUccggguggGCCu -3'
miRNA:   3'- acAUCUgCAGGU-------CGACUAGGCCG--------CGG- -5'
29068 3' -56.4 NC_006146.1 + 157252 0.66 0.923656
Target:  5'- --aGGugG-CC-GCUGccuguGUCCGGCGCUu -3'
miRNA:   3'- acaUCugCaGGuCGAC-----UAGGCCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 160153 0.74 0.507582
Target:  5'- aGUAGAUGUagccgcauggccCCGGCUGGcUCUGGCuGCCc -3'
miRNA:   3'- aCAUCUGCA------------GGUCGACU-AGGCCG-CGG- -5'
29068 3' -56.4 NC_006146.1 + 167284 0.74 0.507582
Target:  5'- cGUggGGAUGgCCGGCggGAggggCCGGCGCCu -3'
miRNA:   3'- aCA--UCUGCaGGUCGa-CUa---GGCCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 169148 0.74 0.507582
Target:  5'- cGUggGGAUGgCCGGCggGAggggCCGGCGCCu -3'
miRNA:   3'- aCA--UCUGCaGGUCGa-CUa---GGCCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 60052 0.74 0.517191
Target:  5'- ----aGCGUCCcuCUGAUCgGGCGCCg -3'
miRNA:   3'- acaucUGCAGGucGACUAGgCCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 33279 0.7 0.706643
Target:  5'- gUGgggGGugGcCCGGCUGGgcaCCGcuGCGCCg -3'
miRNA:   3'- -ACa--UCugCaGGUCGACUa--GGC--CGCGG- -5'
29068 3' -56.4 NC_006146.1 + 71201 0.68 0.826571
Target:  5'- aGUAGAaGUCCAGCgGggCCGuaGCg -3'
miRNA:   3'- aCAUCUgCAGGUCGaCuaGGCcgCGg -5'
29068 3' -56.4 NC_006146.1 + 156031 0.7 0.726251
Target:  5'- cUGUAGuuGUCCAGCUcc-CUGGCuGCCc -3'
miRNA:   3'- -ACAUCugCAGGUCGAcuaGGCCG-CGG- -5'
29068 3' -56.4 NC_006146.1 + 33155 0.7 0.706643
Target:  5'- gUGgggGGugGcCCGGCUGGgcaCCGccGCGCCg -3'
miRNA:   3'- -ACa--UCugCaGGUCGACUa--GGC--CGCGG- -5'
29068 3' -56.4 NC_006146.1 + 68108 0.79 0.273624
Target:  5'- gGUGGGCGgCCAGCcGGUCCgcggugagcGGCGCCa -3'
miRNA:   3'- aCAUCUGCaGGUCGaCUAGG---------CCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 128586 0.69 0.791929
Target:  5'- --cGGACGacuacgaCCGGCUGuacuuUCUGGCGCUg -3'
miRNA:   3'- acaUCUGCa------GGUCGACu----AGGCCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 33971 0.77 0.358756
Target:  5'- gGgcGugGUCCGcuggguccGCUGGUCCGGUGCa -3'
miRNA:   3'- aCauCugCAGGU--------CGACUAGGCCGCGg -5'
29068 3' -56.4 NC_006146.1 + 102560 0.71 0.68679
Target:  5'- --gAGGCGUCCAGCagcaGGUCCGa-GCCg -3'
miRNA:   3'- acaUCUGCAGGUCGa---CUAGGCcgCGG- -5'
29068 3' -56.4 NC_006146.1 + 53359 0.69 0.80082
Target:  5'- cGU-GAgGUCUuGGCUGGcCCGGCGCUu -3'
miRNA:   3'- aCAuCUgCAGG-UCGACUaGGCCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 33607 0.68 0.83482
Target:  5'- gGgcGugGUCC-GCgGGUUCGGUGCa -3'
miRNA:   3'- aCauCugCAGGuCGaCUAGGCCGCGg -5'
29068 3' -56.4 NC_006146.1 + 170080 0.75 0.460768
Target:  5'- cGUggGGAUGgCCGGCggGAggggCCGGCGCCg -3'
miRNA:   3'- aCA--UCUGCaGGUCGa-CUa---GGCCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 168216 0.74 0.507582
Target:  5'- cGUggGGAUGgCCGGCggGAggggCCGGCGCCu -3'
miRNA:   3'- aCA--UCUGCaGGUCGa-CUa---GGCCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.