miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29068 3' -56.4 NC_006146.1 + 48345 0.67 0.858466
Target:  5'- --cAGGCGUCCAGuCUGG-CCaGCggGCCg -3'
miRNA:   3'- acaUCUGCAGGUC-GACUaGGcCG--CGG- -5'
29068 3' -56.4 NC_006146.1 + 56228 0.67 0.85618
Target:  5'- --gAGcCGUCCAGCgGGUCCgcgggggcggaggcGGgGCCg -3'
miRNA:   3'- acaUCuGCAGGUCGaCUAGG--------------CCgCGG- -5'
29068 3' -56.4 NC_006146.1 + 33607 0.68 0.83482
Target:  5'- gGgcGugGUCC-GCgGGUUCGGUGCa -3'
miRNA:   3'- aCauCugCAGGuCGaCUAGGCCGCGg -5'
29068 3' -56.4 NC_006146.1 + 53359 0.69 0.80082
Target:  5'- cGU-GAgGUCUuGGCUGGcCCGGCGCUu -3'
miRNA:   3'- aCAuCUgCAGG-UCGACUaGGCCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 169192 0.66 0.911829
Target:  5'- cGgcgGGGCGUCCcgucgucacgcucGGCUGcacgcgcggCGGCGCCg -3'
miRNA:   3'- aCa--UCUGCAGG-------------UCGACuag------GCCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 167255 0.67 0.893831
Target:  5'- -cUGGAUGUCgGGgaGGgcCCGGgGCCg -3'
miRNA:   3'- acAUCUGCAGgUCgaCUa-GGCCgCGG- -5'
29068 3' -56.4 NC_006146.1 + 137812 0.68 0.842891
Target:  5'- --cGGGgGUCC-GCcGGUCCGGUGCa -3'
miRNA:   3'- acaUCUgCAGGuCGaCUAGGCCGCGg -5'
29068 3' -56.4 NC_006146.1 + 128586 0.69 0.791929
Target:  5'- --cGGACGacuacgaCCGGCUGuacuuUCUGGCGCUg -3'
miRNA:   3'- acaUCUGCa------GGUCGACu----AGGCCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 121146 0.67 0.887187
Target:  5'- ---cGGCGUCUGGgcCUGggCCGcGCGCCc -3'
miRNA:   3'- acauCUGCAGGUC--GACuaGGC-CGCGG- -5'
29068 3' -56.4 NC_006146.1 + 156031 0.7 0.726251
Target:  5'- cUGUAGuuGUCCAGCUcc-CUGGCuGCCc -3'
miRNA:   3'- -ACAUCugCAGGUCGAcuaGGCCG-CGG- -5'
29068 3' -56.4 NC_006146.1 + 56751 0.68 0.850775
Target:  5'- --gGGACGUCCGGggcCUGAUCgCGGaGCa -3'
miRNA:   3'- acaUCUGCAGGUC---GACUAG-GCCgCGg -5'
29068 3' -56.4 NC_006146.1 + 149409 0.67 0.865959
Target:  5'- gGUAGACGgCCAGgUGAggcaUCUgGGUGCUc -3'
miRNA:   3'- aCAUCUGCaGGUCgACU----AGG-CCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 47325 0.68 0.842891
Target:  5'- -cUGGAUGauggccUCCAGCcGggCCaGGCGCCg -3'
miRNA:   3'- acAUCUGC------AGGUCGaCuaGG-CCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 137753 0.68 0.842092
Target:  5'- -cUGGGgGUCCGcucguccGCUGGUCCGGUccggguggGCCu -3'
miRNA:   3'- acAUCUgCAGGU-------CGACUAGGCCG--------CGG- -5'
29068 3' -56.4 NC_006146.1 + 159952 0.68 0.826571
Target:  5'- cGUAGACGUCCcuguGGUagGAggUGGCGCg -3'
miRNA:   3'- aCAUCUGCAGG----UCGa-CUagGCCGCGg -5'
29068 3' -56.4 NC_006146.1 + 71201 0.68 0.826571
Target:  5'- aGUAGAaGUCCAGCgGggCCGuaGCg -3'
miRNA:   3'- aCAUCUgCAGGUCGaCuaGGCcgCGg -5'
29068 3' -56.4 NC_006146.1 + 157252 0.66 0.923656
Target:  5'- --aGGugG-CC-GCUGccuguGUCCGGCGCUu -3'
miRNA:   3'- acaUCugCaGGuCGAC-----UAGGCCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 170123 0.66 0.911829
Target:  5'- cGgcgGGGCGUCCcgucgucacgcucGGCUGcacgcgcggCGGCGCCg -3'
miRNA:   3'- aCa--UCUGCAGG-------------UCGACuag------GCCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 51933 0.66 0.900253
Target:  5'- --cGGGCGgccCCGGUgcGGUCUGcGCGCCa -3'
miRNA:   3'- acaUCUGCa--GGUCGa-CUAGGC-CGCGG- -5'
29068 3' -56.4 NC_006146.1 + 168187 0.67 0.893831
Target:  5'- -cUGGAUGUCgGGgaGGgcCCGGgGCCg -3'
miRNA:   3'- acAUCUGCAGgUCgaCUa-GGCCgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.