Results 41 - 60 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29068 | 3' | -56.4 | NC_006146.1 | + | 170051 | 0.67 | 0.893831 |
Target: 5'- -cUGGAUGUCgGGgaGGgcCCGGgGCCg -3' miRNA: 3'- acAUCUGCAGgUCgaCUa-GGCCgCGG- -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 60052 | 0.74 | 0.517191 |
Target: 5'- ----aGCGUCCcuCUGAUCgGGCGCCg -3' miRNA: 3'- acaucUGCAGGucGACUAGgCCGCGG- -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 23733 | 0.66 | 0.918151 |
Target: 5'- --gGGGCG-CCGGuCUGcgCCGcCGCCg -3' miRNA: 3'- acaUCUGCaGGUC-GACuaGGCcGCGG- -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 43484 | 0.73 | 0.580172 |
Target: 5'- gGUGGACGUugccguacagauuucCCAGUagGGUCCGG-GCCa -3' miRNA: 3'- aCAUCUGCA---------------GGUCGa-CUAGGCCgCGG- -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 74619 | 0.72 | 0.606269 |
Target: 5'- --cAGcACGUgCAGcCUGAUgCGGCGCCc -3' miRNA: 3'- acaUC-UGCAgGUC-GACUAgGCCGCGG- -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 57896 | 0.73 | 0.540537 |
Target: 5'- gGUGGAacggcgccuUGUCCAggacaugcagagggcGCUGG-CCGGCGCCg -3' miRNA: 3'- aCAUCU---------GCAGGU---------------CGACUaGGCCGCGG- -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 26776 | 0.66 | 0.906448 |
Target: 5'- ---cGACGUCCcaGGUUG---CGGCGCCa -3' miRNA: 3'- acauCUGCAGG--UCGACuagGCCGCGG- -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 59805 | 0.66 | 0.906448 |
Target: 5'- --cAGAgcUCCAGCUGAUUgagGGCGUCg -3' miRNA: 3'- acaUCUgcAGGUCGACUAGg--CCGCGG- -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 97440 | 0.71 | 0.683794 |
Target: 5'- gGUGGAUGgaaccuccucuucuUCCAuGUUGucAUCCGGUGCCa -3' miRNA: 3'- aCAUCUGC--------------AGGU-CGAC--UAGGCCGCGG- -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 19569 | 0.71 | 0.686789 |
Target: 5'- gGUGGGCGaCCu-CUcGGUCCGGCGCg -3' miRNA: 3'- aCAUCUGCaGGucGA-CUAGGCCGCGg -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 42695 | 0.67 | 0.893831 |
Target: 5'- --aAGAgCGUCUGGC----CCGGCGCCg -3' miRNA: 3'- acaUCU-GCAGGUCGacuaGGCCGCGG- -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 20328 | 0.67 | 0.893831 |
Target: 5'- gUGcUGGACGauggCCAGCaGAUCCGcGUGUUc -3' miRNA: 3'- -AC-AUCUGCa---GGUCGaCUAGGC-CGCGG- -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 150753 | 0.69 | 0.764449 |
Target: 5'- aGUGGACGggCCugggaGGCUGGUuCUGGgGCUg -3' miRNA: 3'- aCAUCUGCa-GG-----UCGACUA-GGCCgCGG- -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 141520 | 0.69 | 0.764449 |
Target: 5'- aGUGGACGggCCugggaGGCUGGUuCUGGgGCUg -3' miRNA: 3'- aCAUCUGCa-GG-----UCGACUA-GGCCgCGG- -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 40013 | 0.7 | 0.742672 |
Target: 5'- gUGUGGGCGUagcagggggCCuGCUGGgggccguagccgacUCCGGCGUg -3' miRNA: 3'- -ACAUCUGCA---------GGuCGACU--------------AGGCCGCGg -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 24364 | 0.7 | 0.735941 |
Target: 5'- aGUAGugGcgcagggCCAGCUccaGggCgCGGCGCCu -3' miRNA: 3'- aCAUCugCa------GGUCGA---CuaG-GCCGCGG- -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 112361 | 0.68 | 0.809563 |
Target: 5'- aUGUAGGcCG-CCAcGCUGA-CCGGcCGCUu -3' miRNA: 3'- -ACAUCU-GCaGGU-CGACUaGGCC-GCGG- -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 114296 | 0.68 | 0.818149 |
Target: 5'- -aUGGACG-CCGGCgagGAgaCCGGCGgCg -3' miRNA: 3'- acAUCUGCaGGUCGa--CUa-GGCCGCgG- -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 41414 | 0.68 | 0.82657 |
Target: 5'- cGUAGACGgCCGcGCUGggUgGGCGgCu -3' miRNA: 3'- aCAUCUGCaGGU-CGACuaGgCCGCgG- -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 40973 | 0.68 | 0.84289 |
Target: 5'- cGUAGAcCG-CCGugguGCcGcgCCGGCGCCc -3' miRNA: 3'- aCAUCU-GCaGGU----CGaCuaGGCCGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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