Results 21 - 40 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29068 | 3' | -56.4 | NC_006146.1 | + | 13536 | 0.66 | 0.912415 |
Target: 5'- cGUGGACaGgaaCCuGCUGcaggcgCCGGgCGCCg -3' miRNA: 3'- aCAUCUG-Ca--GGuCGACua----GGCC-GCGG- -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 26776 | 0.66 | 0.906448 |
Target: 5'- ---cGACGUCCcaGGUUG---CGGCGCCa -3' miRNA: 3'- acauCUGCAGG--UCGACuagGCCGCGG- -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 59805 | 0.66 | 0.906448 |
Target: 5'- --cAGAgcUCCAGCUGAUUgagGGCGUCg -3' miRNA: 3'- acaUCUgcAGGUCGACUAGg--CCGCGG- -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 123549 | 0.66 | 0.900252 |
Target: 5'- --gAGAcCGUCgCAGaCUGGaaaCGGCGCCu -3' miRNA: 3'- acaUCU-GCAG-GUC-GACUag-GCCGCGG- -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 41414 | 0.68 | 0.82657 |
Target: 5'- cGUAGACGgCCGcGCUGggUgGGCGgCu -3' miRNA: 3'- aCAUCUGCaGGU-CGACuaGgCCGCgG- -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 40973 | 0.68 | 0.84289 |
Target: 5'- cGUAGAcCG-CCGugguGCcGcgCCGGCGCCc -3' miRNA: 3'- aCAUCU-GCaGGU----CGaCuaGGCCGCGG- -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 20328 | 0.67 | 0.893831 |
Target: 5'- gUGcUGGACGauggCCAGCaGAUCCGcGUGUUc -3' miRNA: 3'- -AC-AUCUGCa---GGUCGaCUAGGC-CGCGG- -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 42695 | 0.67 | 0.893831 |
Target: 5'- --aAGAgCGUCUGGC----CCGGCGCCg -3' miRNA: 3'- acaUCU-GCAGGUCGacuaGGCCGCGG- -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 112912 | 0.67 | 0.893831 |
Target: 5'- --cGGGCcUCCAGCUcGUCCugguGCGCCu -3' miRNA: 3'- acaUCUGcAGGUCGAcUAGGc---CGCGG- -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 33155 | 0.7 | 0.706643 |
Target: 5'- gUGgggGGugGcCCGGCUGGgcaCCGccGCGCCg -3' miRNA: 3'- -ACa--UCugCaGGUCGACUa--GGC--CGCGG- -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 102560 | 0.71 | 0.68679 |
Target: 5'- --gAGGCGUCCAGCagcaGGUCCGa-GCCg -3' miRNA: 3'- acaUCUGCAGGUCGa---CUAGGCcgCGG- -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 60052 | 0.74 | 0.517191 |
Target: 5'- ----aGCGUCCcuCUGAUCgGGCGCCg -3' miRNA: 3'- acaucUGCAGGucGACUAGgCCGCGG- -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 169148 | 0.74 | 0.507582 |
Target: 5'- cGUggGGAUGgCCGGCggGAggggCCGGCGCCu -3' miRNA: 3'- aCA--UCUGCaGGUCGa-CUa---GGCCGCGG- -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 168216 | 0.74 | 0.507582 |
Target: 5'- cGUggGGAUGgCCGGCggGAggggCCGGCGCCu -3' miRNA: 3'- aCA--UCUGCaGGUCGa-CUa---GGCCGCGG- -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 167284 | 0.74 | 0.507582 |
Target: 5'- cGUggGGAUGgCCGGCggGAggggCCGGCGCCu -3' miRNA: 3'- aCA--UCUGCaGGUCGa-CUa---GGCCGCGG- -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 160153 | 0.74 | 0.507582 |
Target: 5'- aGUAGAUGUagccgcauggccCCGGCUGGcUCUGGCuGCCc -3' miRNA: 3'- aCAUCUGCA------------GGUCGACU-AGGCCG-CGG- -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 170080 | 0.75 | 0.460768 |
Target: 5'- cGUggGGAUGgCCGGCggGAggggCCGGCGCCg -3' miRNA: 3'- aCA--UCUGCaGGUCGa-CUa---GGCCGCGG- -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 33971 | 0.77 | 0.358756 |
Target: 5'- gGgcGugGUCCGcuggguccGCUGGUCCGGUGCa -3' miRNA: 3'- aCauCugCAGGU--------CGACUAGGCCGCGg -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 68108 | 0.79 | 0.273624 |
Target: 5'- gGUGGGCGgCCAGCcGGUCCgcggugagcGGCGCCa -3' miRNA: 3'- aCAUCUGCaGGUCGaCUAGG---------CCGCGG- -5' |
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29068 | 3' | -56.4 | NC_006146.1 | + | 157252 | 0.66 | 0.923656 |
Target: 5'- --aGGugG-CC-GCUGccuguGUCCGGCGCUu -3' miRNA: 3'- acaUCugCaGGuCGAC-----UAGGCCGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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