miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29068 3' -56.4 NC_006146.1 + 13536 0.66 0.912415
Target:  5'- cGUGGACaGgaaCCuGCUGcaggcgCCGGgCGCCg -3'
miRNA:   3'- aCAUCUG-Ca--GGuCGACua----GGCC-GCGG- -5'
29068 3' -56.4 NC_006146.1 + 26776 0.66 0.906448
Target:  5'- ---cGACGUCCcaGGUUG---CGGCGCCa -3'
miRNA:   3'- acauCUGCAGG--UCGACuagGCCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 59805 0.66 0.906448
Target:  5'- --cAGAgcUCCAGCUGAUUgagGGCGUCg -3'
miRNA:   3'- acaUCUgcAGGUCGACUAGg--CCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 123549 0.66 0.900252
Target:  5'- --gAGAcCGUCgCAGaCUGGaaaCGGCGCCu -3'
miRNA:   3'- acaUCU-GCAG-GUC-GACUag-GCCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 41414 0.68 0.82657
Target:  5'- cGUAGACGgCCGcGCUGggUgGGCGgCu -3'
miRNA:   3'- aCAUCUGCaGGU-CGACuaGgCCGCgG- -5'
29068 3' -56.4 NC_006146.1 + 40973 0.68 0.84289
Target:  5'- cGUAGAcCG-CCGugguGCcGcgCCGGCGCCc -3'
miRNA:   3'- aCAUCU-GCaGGU----CGaCuaGGCCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 20328 0.67 0.893831
Target:  5'- gUGcUGGACGauggCCAGCaGAUCCGcGUGUUc -3'
miRNA:   3'- -AC-AUCUGCa---GGUCGaCUAGGC-CGCGG- -5'
29068 3' -56.4 NC_006146.1 + 42695 0.67 0.893831
Target:  5'- --aAGAgCGUCUGGC----CCGGCGCCg -3'
miRNA:   3'- acaUCU-GCAGGUCGacuaGGCCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 112912 0.67 0.893831
Target:  5'- --cGGGCcUCCAGCUcGUCCugguGCGCCu -3'
miRNA:   3'- acaUCUGcAGGUCGAcUAGGc---CGCGG- -5'
29068 3' -56.4 NC_006146.1 + 33155 0.7 0.706643
Target:  5'- gUGgggGGugGcCCGGCUGGgcaCCGccGCGCCg -3'
miRNA:   3'- -ACa--UCugCaGGUCGACUa--GGC--CGCGG- -5'
29068 3' -56.4 NC_006146.1 + 102560 0.71 0.68679
Target:  5'- --gAGGCGUCCAGCagcaGGUCCGa-GCCg -3'
miRNA:   3'- acaUCUGCAGGUCGa---CUAGGCcgCGG- -5'
29068 3' -56.4 NC_006146.1 + 60052 0.74 0.517191
Target:  5'- ----aGCGUCCcuCUGAUCgGGCGCCg -3'
miRNA:   3'- acaucUGCAGGucGACUAGgCCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 169148 0.74 0.507582
Target:  5'- cGUggGGAUGgCCGGCggGAggggCCGGCGCCu -3'
miRNA:   3'- aCA--UCUGCaGGUCGa-CUa---GGCCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 168216 0.74 0.507582
Target:  5'- cGUggGGAUGgCCGGCggGAggggCCGGCGCCu -3'
miRNA:   3'- aCA--UCUGCaGGUCGa-CUa---GGCCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 167284 0.74 0.507582
Target:  5'- cGUggGGAUGgCCGGCggGAggggCCGGCGCCu -3'
miRNA:   3'- aCA--UCUGCaGGUCGa-CUa---GGCCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 160153 0.74 0.507582
Target:  5'- aGUAGAUGUagccgcauggccCCGGCUGGcUCUGGCuGCCc -3'
miRNA:   3'- aCAUCUGCA------------GGUCGACU-AGGCCG-CGG- -5'
29068 3' -56.4 NC_006146.1 + 170080 0.75 0.460768
Target:  5'- cGUggGGAUGgCCGGCggGAggggCCGGCGCCg -3'
miRNA:   3'- aCA--UCUGCaGGUCGa-CUa---GGCCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 33971 0.77 0.358756
Target:  5'- gGgcGugGUCCGcuggguccGCUGGUCCGGUGCa -3'
miRNA:   3'- aCauCugCAGGU--------CGACUAGGCCGCGg -5'
29068 3' -56.4 NC_006146.1 + 68108 0.79 0.273624
Target:  5'- gGUGGGCGgCCAGCcGGUCCgcggugagcGGCGCCa -3'
miRNA:   3'- aCAUCUGCaGGUCGaCUAGG---------CCGCGG- -5'
29068 3' -56.4 NC_006146.1 + 157252 0.66 0.923656
Target:  5'- --aGGugG-CC-GCUGccuguGUCCGGCGCUu -3'
miRNA:   3'- acaUCugCaGGuCGAC-----UAGGCCGCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.