miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29068 5' -63.2 NC_006146.1 + 120693 0.66 0.660027
Target:  5'- gCGGGUGCAcGGGCGGacGCuggagcagcaccugaUCCGGGa-- -3'
miRNA:   3'- -GCCCGCGUuCUCGCC--CG---------------AGGCCCagc -5'
29068 5' -63.2 NC_006146.1 + 42257 0.66 0.656186
Target:  5'- -cGGCGCgAGGAGCuGGCUCagcuGGG-CGa -3'
miRNA:   3'- gcCCGCG-UUCUCGcCCGAGg---CCCaGC- -5'
29068 5' -63.2 NC_006146.1 + 51832 0.66 0.656186
Target:  5'- gGGGCgGCGuggAGGG-GGGCUCgGGGcCu -3'
miRNA:   3'- gCCCG-CGU---UCUCgCCCGAGgCCCaGc -5'
29068 5' -63.2 NC_006146.1 + 129 0.66 0.655226
Target:  5'- gGGGCuucgucacGCAAGGGUgauuucggagagGGGCUucgucacgcucggCUGGGUCGg -3'
miRNA:   3'- gCCCG--------CGUUCUCG------------CCCGA-------------GGCCCAGC- -5'
29068 5' -63.2 NC_006146.1 + 135877 0.66 0.646574
Target:  5'- gCGGGgGguGGc-CGGGCcgcugCCGGGUCc -3'
miRNA:   3'- -GCCCgCguUCucGCCCGa----GGCCCAGc -5'
29068 5' -63.2 NC_006146.1 + 135413 0.66 0.646574
Target:  5'- gCGGGgGguGGc-CGGGCcgcugCCGGGUCc -3'
miRNA:   3'- -GCCCgCguUCucGCCCGa----GGCCCAGc -5'
29068 5' -63.2 NC_006146.1 + 135599 0.66 0.646574
Target:  5'- gCGGGgGguGGc-CGGGCcgcugCCGGGUCc -3'
miRNA:   3'- -GCCCgCguUCucGCCCGa----GGCCCAGc -5'
29068 5' -63.2 NC_006146.1 + 135320 0.66 0.646574
Target:  5'- gCGGGgGguGGc-CGGGCcgcugCCGGGUCc -3'
miRNA:   3'- -GCCCgCguUCucGCCCGa----GGCCCAGc -5'
29068 5' -63.2 NC_006146.1 + 135227 0.66 0.646574
Target:  5'- gCGGGgGguGGc-CGGGCcgcugCCGGGUCc -3'
miRNA:   3'- -GCCCgCguUCucGCCCGa----GGCCCAGc -5'
29068 5' -63.2 NC_006146.1 + 135692 0.66 0.646574
Target:  5'- gCGGGgGguGGc-CGGGCcgcugCCGGGUCc -3'
miRNA:   3'- -GCCCgCguUCucGCCCGa----GGCCCAGc -5'
29068 5' -63.2 NC_006146.1 + 136063 0.66 0.646574
Target:  5'- gCGGGgGguGGc-CGGGCcgcugCCGGGUCc -3'
miRNA:   3'- -GCCCgCguUCucGCCCGa----GGCCCAGc -5'
29068 5' -63.2 NC_006146.1 + 136342 0.66 0.646574
Target:  5'- gCGGGgGguGGc-CGGGCcgcugCCGGGUCc -3'
miRNA:   3'- -GCCCgCguUCucGCCCGa----GGCCCAGc -5'
29068 5' -63.2 NC_006146.1 + 135134 0.66 0.646574
Target:  5'- gCGGGgGguGGc-CGGGCcgcugCCGGGUCc -3'
miRNA:   3'- -GCCCgCguUCucGCCCGa----GGCCCAGc -5'
29068 5' -63.2 NC_006146.1 + 135970 0.66 0.646574
Target:  5'- gCGGGgGguGGc-CGGGCcgcugCCGGGUCc -3'
miRNA:   3'- -GCCCgCguUCucGCCCGa----GGCCCAGc -5'
29068 5' -63.2 NC_006146.1 + 136249 0.66 0.646574
Target:  5'- gCGGGgGguGGc-CGGGCcgcugCCGGGUCc -3'
miRNA:   3'- -GCCCgCguUCucGCCCGa----GGCCCAGc -5'
29068 5' -63.2 NC_006146.1 + 136156 0.66 0.646574
Target:  5'- gCGGGgGguGGc-CGGGCcgcugCCGGGUCc -3'
miRNA:   3'- -GCCCgCguUCucGCCCGa----GGCCCAGc -5'
29068 5' -63.2 NC_006146.1 + 136621 0.66 0.646574
Target:  5'- gCGGGgGguGGc-CGGGCcgcugCCGGGUCc -3'
miRNA:   3'- -GCCCgCguUCucGCCCGa----GGCCCAGc -5'
29068 5' -63.2 NC_006146.1 + 136528 0.66 0.646574
Target:  5'- gCGGGgGguGGc-CGGGCcgcugCCGGGUCc -3'
miRNA:   3'- -GCCCgCguUCucGCCCGa----GGCCCAGc -5'
29068 5' -63.2 NC_006146.1 + 136435 0.66 0.646574
Target:  5'- gCGGGgGguGGc-CGGGCcgcugCCGGGUCc -3'
miRNA:   3'- -GCCCgCguUCucGCCCGa----GGCCCAGc -5'
29068 5' -63.2 NC_006146.1 + 111342 0.66 0.646574
Target:  5'- uGGGCGCAAcccgaGGUGGGCaUCaGGG-CGa -3'
miRNA:   3'- gCCCGCGUUc----UCGCCCG-AGgCCCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.