miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29068 5' -63.2 NC_006146.1 + 42257 0.66 0.656186
Target:  5'- -cGGCGCgAGGAGCuGGCUCagcuGGG-CGa -3'
miRNA:   3'- gcCCGCG-UUCUCGcCCGAGg---CCCaGC- -5'
29068 5' -63.2 NC_006146.1 + 61825 0.66 0.608092
Target:  5'- gGGGCGCugguGGGGGCagugGGGCUggugCCGGGa-- -3'
miRNA:   3'- gCCCGCG----UUCUCG----CCCGA----GGCCCagc -5'
29068 5' -63.2 NC_006146.1 + 167621 0.66 0.627326
Target:  5'- gGGGCGgAGGGGgGGGUcCCGcGGggccCGg -3'
miRNA:   3'- gCCCGCgUUCUCgCCCGaGGC-CCa---GC- -5'
29068 5' -63.2 NC_006146.1 + 120693 0.66 0.660027
Target:  5'- gCGGGUGCAcGGGCGGacGCuggagcagcaccugaUCCGGGa-- -3'
miRNA:   3'- -GCCCGCGUuCUCGCC--CG---------------AGGCCCagc -5'
29068 5' -63.2 NC_006146.1 + 168553 0.66 0.627326
Target:  5'- gGGGCGgAGGGGgGGGUcCCGcGGggccCGg -3'
miRNA:   3'- gCCCGCgUUCUCgCCCGaGGC-CCa---GC- -5'
29068 5' -63.2 NC_006146.1 + 169485 0.66 0.627326
Target:  5'- gGGGCGgAGGGGgGGGUcCCGcGGggccCGg -3'
miRNA:   3'- gCCCGCgUUCUCgCCCGaGGC-CCa---GC- -5'
29068 5' -63.2 NC_006146.1 + 170416 0.66 0.627326
Target:  5'- gGGGCGgAGGGGgGGGUcCCGcGGggccCGg -3'
miRNA:   3'- gCCCGCgUUCUCgCCCGaGGC-CCa---GC- -5'
29068 5' -63.2 NC_006146.1 + 33207 0.66 0.627326
Target:  5'- cCGGGUGCuccuGGuGCuccgGGGCagCCGGGUgGc -3'
miRNA:   3'- -GCCCGCGu---UCuCG----CCCGa-GGCCCAgC- -5'
29068 5' -63.2 NC_006146.1 + 167860 0.66 0.634064
Target:  5'- uGGGCGCucagaucggcgcggGGGAGCcccgGGGCggcCCGGGg-- -3'
miRNA:   3'- gCCCGCG--------------UUCUCG----CCCGa--GGCCCagc -5'
29068 5' -63.2 NC_006146.1 + 78573 0.66 0.611935
Target:  5'- gCGGGUGCuguucugagccagggGAGAGgGGuGCUgCGaGGUCa -3'
miRNA:   3'- -GCCCGCG---------------UUCUCgCC-CGAgGC-CCAGc -5'
29068 5' -63.2 NC_006146.1 + 44528 0.66 0.621553
Target:  5'- uGGGauccaugGCAggauauccuggaaaaGGGGCcgGGGCUCCGGGUgGc -3'
miRNA:   3'- gCCCg------CGU---------------UCUCG--CCCGAGGCCCAgC- -5'
29068 5' -63.2 NC_006146.1 + 76894 0.66 0.634065
Target:  5'- cCGGGcCGCAcgugGGAGCcagaggugaccgcgGGGCUgcagCCGGGUg- -3'
miRNA:   3'- -GCCC-GCGU----UCUCG--------------CCCGA----GGCCCAgc -5'
29068 5' -63.2 NC_006146.1 + 129 0.66 0.655226
Target:  5'- gGGGCuucgucacGCAAGGGUgauuucggagagGGGCUucgucacgcucggCUGGGUCGg -3'
miRNA:   3'- gCCCG--------CGUUCUCG------------CCCGA-------------GGCCCAGC- -5'
29068 5' -63.2 NC_006146.1 + 111342 0.66 0.646574
Target:  5'- uGGGCGCAAcccgaGGUGGGCaUCaGGG-CGa -3'
miRNA:   3'- gCCCGCGUUc----UCGCCCG-AGgCCCaGC- -5'
29068 5' -63.2 NC_006146.1 + 64186 0.66 0.645612
Target:  5'- gGGGCaGCAGGAguugcaaggugucGCGGaGCUCCGGc--- -3'
miRNA:   3'- gCCCG-CGUUCU-------------CGCC-CGAGGCCcagc -5'
29068 5' -63.2 NC_006146.1 + 2941 0.66 0.645612
Target:  5'- aGGGUGauuUAGGAGagGGGCUucgucacgcucggCUGGGUCGg -3'
miRNA:   3'- gCCCGC---GUUCUCg-CCCGA-------------GGCCCAGC- -5'
29068 5' -63.2 NC_006146.1 + 2008 0.66 0.645612
Target:  5'- aGGGUGauuUAGGAGagGGGCUucgucacgcucggCUGGGUCGg -3'
miRNA:   3'- gCCCGC---GUUCUCg-CCCGA-------------GGCCCAGC- -5'
29068 5' -63.2 NC_006146.1 + 1076 0.66 0.645612
Target:  5'- aGGGUGauuUAGGAGagGGGCUucgucacgcucggCUGGGUCGg -3'
miRNA:   3'- gCCCGC---GUUCUCg-CCCGA-------------GGCCCAGC- -5'
29068 5' -63.2 NC_006146.1 + 14818 0.66 0.636952
Target:  5'- cCGGGcCGgAGGAGggcacggucuCGGGC-CCGGGgccgCGg -3'
miRNA:   3'- -GCCC-GCgUUCUC----------GCCCGaGGCCCa---GC- -5'
29068 5' -63.2 NC_006146.1 + 156674 0.66 0.636952
Target:  5'- uGGGCGagguuuGGGGC-GGCUggGGGUCGg -3'
miRNA:   3'- gCCCGCgu----UCUCGcCCGAggCCCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.