miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29068 5' -63.2 NC_006146.1 + 99913 1.07 0.001095
Target:  5'- cCGGGCGCAAGAGCGGGCUCCGGGUCGc -3'
miRNA:   3'- -GCCCGCGUUCUCGCCCGAGGCCCAGC- -5'
29068 5' -63.2 NC_006146.1 + 48624 0.87 0.030731
Target:  5'- uCGGGUGCcguGGGGGCGGGCUCCGGG-CGg -3'
miRNA:   3'- -GCCCGCG---UUCUCGCCCGAGGCCCaGC- -5'
29068 5' -63.2 NC_006146.1 + 53600 0.8 0.093991
Target:  5'- gCGGGCGUAuauguuuuaauaGGGGUGGuCUCCGGGUCGg -3'
miRNA:   3'- -GCCCGCGU------------UCUCGCCcGAGGCCCAGC- -5'
29068 5' -63.2 NC_006146.1 + 77912 0.78 0.135641
Target:  5'- -aGGCGCAGGGGCGGGCggCCucgcaggugccggGGGUCGc -3'
miRNA:   3'- gcCCGCGUUCUCGCCCGa-GG-------------CCCAGC- -5'
29068 5' -63.2 NC_006146.1 + 43588 0.76 0.168859
Target:  5'- cCGGGgaGCGGG-GCGGGaggCCGGGUCGg -3'
miRNA:   3'- -GCCCg-CGUUCuCGCCCga-GGCCCAGC- -5'
29068 5' -63.2 NC_006146.1 + 129117 0.74 0.223673
Target:  5'- aGGGCcUGAGAGCGGGCgcCCGGG-CGc -3'
miRNA:   3'- gCCCGcGUUCUCGCCCGa-GGCCCaGC- -5'
29068 5' -63.2 NC_006146.1 + 55014 0.73 0.256376
Target:  5'- cCGGGCGgGaugGGGGCGGGCgggauggGGGUCGg -3'
miRNA:   3'- -GCCCGCgU---UCUCGCCCGagg----CCCAGC- -5'
29068 5' -63.2 NC_006146.1 + 155552 0.73 0.274148
Target:  5'- aGGGCGUuGGAGcCGGGCUCgcgCGGGgCGc -3'
miRNA:   3'- gCCCGCGuUCUC-GCCCGAG---GCCCaGC- -5'
29068 5' -63.2 NC_006146.1 + 40912 0.73 0.274148
Target:  5'- cCGGGCGCGAuGGauGGUUCCaGGUCGc -3'
miRNA:   3'- -GCCCGCGUUcUCgcCCGAGGcCCAGC- -5'
29068 5' -63.2 NC_006146.1 + 67001 0.73 0.280287
Target:  5'- gGGGUGUAGGAGauGGC-CCGGGUg- -3'
miRNA:   3'- gCCCGCGUUCUCgcCCGaGGCCCAgc -5'
29068 5' -63.2 NC_006146.1 + 95459 0.72 0.32633
Target:  5'- aGGGCaGgAAGGGgGGcucugagaGCUCCGGGUCa -3'
miRNA:   3'- gCCCG-CgUUCUCgCC--------CGAGGCCCAGc -5'
29068 5' -63.2 NC_006146.1 + 84088 0.72 0.32633
Target:  5'- aCGGGCGagaauGGGGCGGGCUCauGGcCa -3'
miRNA:   3'- -GCCCGCgu---UCUCGCCCGAGgcCCaGc -5'
29068 5' -63.2 NC_006146.1 + 90545 0.71 0.340476
Target:  5'- cCGGaGCGguGGAGCaGGGC-CCGGGa-- -3'
miRNA:   3'- -GCC-CGCguUCUCG-CCCGaGGCCCagc -5'
29068 5' -63.2 NC_006146.1 + 110886 0.71 0.347714
Target:  5'- uCGGGCGCA--GGCGGGgaCgGGGcCGc -3'
miRNA:   3'- -GCCCGCGUucUCGCCCgaGgCCCaGC- -5'
29068 5' -63.2 NC_006146.1 + 167440 0.71 0.37008
Target:  5'- gGGGCGgGGGgucgGGCGGGCaugcUCCGGGguaaCGa -3'
miRNA:   3'- gCCCGCgUUC----UCGCCCG----AGGCCCa---GC- -5'
29068 5' -63.2 NC_006146.1 + 168372 0.71 0.37008
Target:  5'- gGGGCGgGGGgucgGGCGGGCaugcUCCGGGguaaCGa -3'
miRNA:   3'- gCCCGCgUUC----UCGCCCG----AGGCCCa---GC- -5'
29068 5' -63.2 NC_006146.1 + 47042 0.71 0.37008
Target:  5'- uGGGUGCGAGAagGGGCcggucgCCGGuGUCGg -3'
miRNA:   3'- gCCCGCGUUCUcgCCCGa-----GGCC-CAGC- -5'
29068 5' -63.2 NC_006146.1 + 169304 0.71 0.37008
Target:  5'- gGGGCGgGGGgucgGGCGGGCaugcUCCGGGguaaCGa -3'
miRNA:   3'- gCCCGCgUUC----UCGCCCG----AGGCCCa---GC- -5'
29068 5' -63.2 NC_006146.1 + 170235 0.71 0.37008
Target:  5'- gGGGCGgGGGgucgGGCGGGCaugcUCCGGGguaaCGa -3'
miRNA:   3'- gCCCGCgUUC----UCGCCCG----AGGCCCa---GC- -5'
29068 5' -63.2 NC_006146.1 + 167802 0.7 0.386312
Target:  5'- uGGGCGU---GGCGGGCgcgcguggcccgcccCCGGGUCu -3'
miRNA:   3'- gCCCGCGuucUCGCCCGa--------------GGCCCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.