miRNA display CGI


Results 21 - 40 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29068 5' -63.2 NC_006146.1 + 169666 0.7 0.386312
Target:  5'- uGGGCGU---GGCGGGCgcgcguggcccgcccCCGGGUCu -3'
miRNA:   3'- gCCCGCGuucUCGCCCGa--------------GGCCCAGc -5'
29068 5' -63.2 NC_006146.1 + 168734 0.7 0.386312
Target:  5'- uGGGCGU---GGCGGGCgcgcguggcccgcccCCGGGUCu -3'
miRNA:   3'- gCCCGCGuucUCGCCCGa--------------GGCCCAGc -5'
29068 5' -63.2 NC_006146.1 + 169241 0.7 0.393411
Target:  5'- cCGGGgGCu-GAGgGGGCUCCcgaGGG-CGg -3'
miRNA:   3'- -GCCCgCGuuCUCgCCCGAGG---CCCaGC- -5'
29068 5' -63.2 NC_006146.1 + 168309 0.7 0.393411
Target:  5'- cCGGGgGCu-GAGgGGGCUCCcgaGGG-CGg -3'
miRNA:   3'- -GCCCgCGuuCUCgCCCGAGG---CCCaGC- -5'
29068 5' -63.2 NC_006146.1 + 167377 0.7 0.393411
Target:  5'- cCGGGgGCu-GAGgGGGCUCCcgaGGG-CGg -3'
miRNA:   3'- -GCCCgCGuuCUCgCCCGAGG---CCCaGC- -5'
29068 5' -63.2 NC_006146.1 + 170172 0.7 0.393411
Target:  5'- cCGGGgGCu-GAGgGGGCUCCcgaGGG-CGg -3'
miRNA:   3'- -GCCCgCGuuCUCgCCCGAGG---CCCaGC- -5'
29068 5' -63.2 NC_006146.1 + 68196 0.7 0.393411
Target:  5'- gCGGGCGC---AGC-GGCUCCGGGagGu -3'
miRNA:   3'- -GCCCGCGuucUCGcCCGAGGCCCagC- -5'
29068 5' -63.2 NC_006146.1 + 100000 0.7 0.401397
Target:  5'- uCGGGauCGGGAGCGGGCacgUCGGGaggCGg -3'
miRNA:   3'- -GCCCgcGUUCUCGCCCGa--GGCCCa--GC- -5'
29068 5' -63.2 NC_006146.1 + 54690 0.7 0.408672
Target:  5'- gGuGGCGUAaaugagcucgaggGGAcgGCGGGC-CCGGGUCa -3'
miRNA:   3'- gC-CCGCGU-------------UCU--CGCCCGaGGCCCAGc -5'
29068 5' -63.2 NC_006146.1 + 46798 0.7 0.409485
Target:  5'- -cGGCGCGAGGGCaaaGGcCUCUGGGUUc -3'
miRNA:   3'- gcCCGCGUUCUCGc--CC-GAGGCCCAGc -5'
29068 5' -63.2 NC_006146.1 + 50289 0.7 0.425963
Target:  5'- gGGGCGCAGGAGaucugucaGGcGCcgCCGGGcCu -3'
miRNA:   3'- gCCCGCGUUCUCg-------CC-CGa-GGCCCaGc -5'
29068 5' -63.2 NC_006146.1 + 28243 0.7 0.429305
Target:  5'- gGaGGCGCcuGGGCGaGGCUggguggcugggcaggCCGGGUCu -3'
miRNA:   3'- gC-CCGCGuuCUCGC-CCGA---------------GGCCCAGc -5'
29068 5' -63.2 NC_006146.1 + 25165 0.7 0.429305
Target:  5'- gGaGGCGCcuGGGCGaGGCUggguggcugggcaggCCGGGUCu -3'
miRNA:   3'- gC-CCGCGuuCUCGC-CCGA---------------GGCCCAGc -5'
29068 5' -63.2 NC_006146.1 + 19009 0.7 0.429305
Target:  5'- gGaGGCGCcuGGGCGaGGCUggguggcugggcaggCCGGGUCu -3'
miRNA:   3'- gC-CCGCGuuCUCGC-CCGA---------------GGCCCAGc -5'
29068 5' -63.2 NC_006146.1 + 22087 0.7 0.429305
Target:  5'- gGaGGCGCcuGGGCGaGGCUggguggcugggcaggCCGGGUCu -3'
miRNA:   3'- gC-CCGCGuuCUCGC-CCGA---------------GGCCCAGc -5'
29068 5' -63.2 NC_006146.1 + 137598 0.69 0.434348
Target:  5'- uCGGGC-CGGGGGcCGGGUgcccCUGGGUCc -3'
miRNA:   3'- -GCCCGcGUUCUC-GCCCGa---GGCCCAGc -5'
29068 5' -63.2 NC_006146.1 + 51572 0.69 0.442828
Target:  5'- uGGGCGCcgccGGGAG-GGGC-CCGGGg-- -3'
miRNA:   3'- gCCCGCG----UUCUCgCCCGaGGCCCagc -5'
29068 5' -63.2 NC_006146.1 + 138145 0.69 0.442828
Target:  5'- uGGGgGCAAu-GUGGGCUuuGGGUa- -3'
miRNA:   3'- gCCCgCGUUcuCGCCCGAggCCCAgc -5'
29068 5' -63.2 NC_006146.1 + 12853 0.69 0.446246
Target:  5'- gGaGGCGCcuGGGGCGaGGCUggguggcugggcaggCCGGGUCu -3'
miRNA:   3'- gC-CCGCGu-UCUCGC-CCGA---------------GGCCCAGc -5'
29068 5' -63.2 NC_006146.1 + 123922 0.69 0.460064
Target:  5'- aCGGGCGCAAuuccuGGC-GGCggCCGGGcCGg -3'
miRNA:   3'- -GCCCGCGUUc----UCGcCCGa-GGCCCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.