miRNA display CGI


Results 21 - 40 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29068 5' -63.2 NC_006146.1 + 135506 0.66 0.646574
Target:  5'- gCGGGgGguGGc-CGGGCcgcugCCGGGUCc -3'
miRNA:   3'- -GCCCgCguUCucGCCCGa----GGCCCAGc -5'
29068 5' -63.2 NC_006146.1 + 135784 0.66 0.646574
Target:  5'- gCGGGgGguGGc-CGGGCcgcugCCGGGUCc -3'
miRNA:   3'- -GCCCgCguUCucGCCCGa----GGCCCAGc -5'
29068 5' -63.2 NC_006146.1 + 137085 0.66 0.646574
Target:  5'- gCGGGgGguGGc-CGGGCcgcugCCGGGUCc -3'
miRNA:   3'- -GCCCgCguUCucGCCCGa----GGCCCAGc -5'
29068 5' -63.2 NC_006146.1 + 136992 0.66 0.646574
Target:  5'- gCGGGgGguGGc-CGGGCcgcugCCGGGUCc -3'
miRNA:   3'- -GCCCgCguUCucGCCCGa----GGCCCAGc -5'
29068 5' -63.2 NC_006146.1 + 136899 0.66 0.646574
Target:  5'- gCGGGgGguGGc-CGGGCcgcugCCGGGUCc -3'
miRNA:   3'- -GCCCgCguUCucGCCCGa----GGCCCAGc -5'
29068 5' -63.2 NC_006146.1 + 136806 0.66 0.646574
Target:  5'- gCGGGgGguGGc-CGGGCcgcugCCGGGUCc -3'
miRNA:   3'- -GCCCgCguUCucGCCCGa----GGCCCAGc -5'
29068 5' -63.2 NC_006146.1 + 111342 0.66 0.646574
Target:  5'- uGGGCGCAAcccgaGGUGGGCaUCaGGG-CGa -3'
miRNA:   3'- gCCCGCGUUc----UCGCCCG-AGgCCCaGC- -5'
29068 5' -63.2 NC_006146.1 + 136528 0.66 0.646574
Target:  5'- gCGGGgGguGGc-CGGGCcgcugCCGGGUCc -3'
miRNA:   3'- -GCCCgCguUCucGCCCGa----GGCCCAGc -5'
29068 5' -63.2 NC_006146.1 + 136342 0.66 0.646574
Target:  5'- gCGGGgGguGGc-CGGGCcgcugCCGGGUCc -3'
miRNA:   3'- -GCCCgCguUCucGCCCGa----GGCCCAGc -5'
29068 5' -63.2 NC_006146.1 + 136249 0.66 0.646574
Target:  5'- gCGGGgGguGGc-CGGGCcgcugCCGGGUCc -3'
miRNA:   3'- -GCCCgCguUCucGCCCGa----GGCCCAGc -5'
29068 5' -63.2 NC_006146.1 + 136156 0.66 0.646574
Target:  5'- gCGGGgGguGGc-CGGGCcgcugCCGGGUCc -3'
miRNA:   3'- -GCCCgCguUCucGCCCGa----GGCCCAGc -5'
29068 5' -63.2 NC_006146.1 + 136063 0.66 0.646574
Target:  5'- gCGGGgGguGGc-CGGGCcgcugCCGGGUCc -3'
miRNA:   3'- -GCCCgCguUCucGCCCGa----GGCCCAGc -5'
29068 5' -63.2 NC_006146.1 + 64186 0.66 0.645612
Target:  5'- gGGGCaGCAGGAguugcaaggugucGCGGaGCUCCGGc--- -3'
miRNA:   3'- gCCCG-CGUUCU-------------CGCC-CGAGGCCcagc -5'
29068 5' -63.2 NC_006146.1 + 2941 0.66 0.645612
Target:  5'- aGGGUGauuUAGGAGagGGGCUucgucacgcucggCUGGGUCGg -3'
miRNA:   3'- gCCCGC---GUUCUCg-CCCGA-------------GGCCCAGC- -5'
29068 5' -63.2 NC_006146.1 + 1076 0.66 0.645612
Target:  5'- aGGGUGauuUAGGAGagGGGCUucgucacgcucggCUGGGUCGg -3'
miRNA:   3'- gCCCGC---GUUCUCg-CCCGA-------------GGCCCAGC- -5'
29068 5' -63.2 NC_006146.1 + 2008 0.66 0.645612
Target:  5'- aGGGUGauuUAGGAGagGGGCUucgucacgcucggCUGGGUCGg -3'
miRNA:   3'- gCCCGC---GUUCUCg-CCCGA-------------GGCCCAGC- -5'
29068 5' -63.2 NC_006146.1 + 14818 0.66 0.636952
Target:  5'- cCGGGcCGgAGGAGggcacggucuCGGGC-CCGGGgccgCGg -3'
miRNA:   3'- -GCCC-GCgUUCUC----------GCCCGaGGCCCa---GC- -5'
29068 5' -63.2 NC_006146.1 + 156674 0.66 0.636952
Target:  5'- uGGGCGagguuuGGGGC-GGCUggGGGUCGg -3'
miRNA:   3'- gCCCGCgu----UCUCGcCCGAggCCCAGC- -5'
29068 5' -63.2 NC_006146.1 + 126036 0.66 0.636952
Target:  5'- uGGGC-CGGGAGggacUGGGCUCCcuuGGGUa- -3'
miRNA:   3'- gCCCGcGUUCUC----GCCCGAGG---CCCAgc -5'
29068 5' -63.2 NC_006146.1 + 153538 0.66 0.635989
Target:  5'- gGGGCGUggGgcugcuugggaacGGUGGaGCUgCCGuGGUCa -3'
miRNA:   3'- gCCCGCGuuC-------------UCGCC-CGA-GGC-CCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.