miRNA display CGI


Results 41 - 60 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29068 5' -63.2 NC_006146.1 + 76894 0.66 0.634065
Target:  5'- cCGGGcCGCAcgugGGAGCcagaggugaccgcgGGGCUgcagCCGGGUg- -3'
miRNA:   3'- -GCCC-GCGU----UCUCG--------------CCCGA----GGCCCAgc -5'
29068 5' -63.2 NC_006146.1 + 168792 0.66 0.634064
Target:  5'- uGGGCGCucagaucggcgcggGGGAGCcccgGGGCggcCCGGGg-- -3'
miRNA:   3'- gCCCGCG--------------UUCUCG----CCCGa--GGCCCagc -5'
29068 5' -63.2 NC_006146.1 + 167860 0.66 0.634064
Target:  5'- uGGGCGCucagaucggcgcggGGGAGCcccgGGGCggcCCGGGg-- -3'
miRNA:   3'- gCCCGCG--------------UUCUCG----CCCGa--GGCCCagc -5'
29068 5' -63.2 NC_006146.1 + 169724 0.66 0.634064
Target:  5'- uGGGCGCucagaucggcgcggGGGAGCcccgGGGCggcCCGGGg-- -3'
miRNA:   3'- gCCCGCG--------------UUCUCG----CCCGa--GGCCCagc -5'
29068 5' -63.2 NC_006146.1 + 168553 0.66 0.627326
Target:  5'- gGGGCGgAGGGGgGGGUcCCGcGGggccCGg -3'
miRNA:   3'- gCCCGCgUUCUCgCCCGaGGC-CCa---GC- -5'
29068 5' -63.2 NC_006146.1 + 33207 0.66 0.627326
Target:  5'- cCGGGUGCuccuGGuGCuccgGGGCagCCGGGUgGc -3'
miRNA:   3'- -GCCCGCGu---UCuCG----CCCGa-GGCCCAgC- -5'
29068 5' -63.2 NC_006146.1 + 170416 0.66 0.627326
Target:  5'- gGGGCGgAGGGGgGGGUcCCGcGGggccCGg -3'
miRNA:   3'- gCCCGCgUUCUCgCCCGaGGC-CCa---GC- -5'
29068 5' -63.2 NC_006146.1 + 169485 0.66 0.627326
Target:  5'- gGGGCGgAGGGGgGGGUcCCGcGGggccCGg -3'
miRNA:   3'- gCCCGCgUUCUCgCCCGaGGC-CCa---GC- -5'
29068 5' -63.2 NC_006146.1 + 167621 0.66 0.627326
Target:  5'- gGGGCGgAGGGGgGGGUcCCGcGGggccCGg -3'
miRNA:   3'- gCCCGCgUUCUCgCCCGaGGC-CCa---GC- -5'
29068 5' -63.2 NC_006146.1 + 44528 0.66 0.621553
Target:  5'- uGGGauccaugGCAggauauccuggaaaaGGGGCcgGGGCUCCGGGUgGc -3'
miRNA:   3'- gCCCg------CGU---------------UCUCG--CCCGAGGCCCAgC- -5'
29068 5' -63.2 NC_006146.1 + 78573 0.66 0.611935
Target:  5'- gCGGGUGCuguucugagccagggGAGAGgGGuGCUgCGaGGUCa -3'
miRNA:   3'- -GCCCGCG---------------UUCUCgCC-CGAgGC-CCAGc -5'
29068 5' -63.2 NC_006146.1 + 61825 0.66 0.608092
Target:  5'- gGGGCGCugguGGGGGCagugGGGCUggugCCGGGa-- -3'
miRNA:   3'- gCCCGCG----UUCUCG----CCCGA----GGCCCagc -5'
29068 5' -63.2 NC_006146.1 + 136741 0.67 0.602331
Target:  5'- gGGGCGCAccccccacccucGCcgGGGCUCCGGGagGc -3'
miRNA:   3'- gCCCGCGUucu---------CG--CCCGAGGCCCagC- -5'
29068 5' -63.2 NC_006146.1 + 67345 0.67 0.599453
Target:  5'- cCGGGCGagcccauccuCGGGgUCCGGGUCc -3'
miRNA:   3'- -GCCCGCguucuc----GCCCgAGGCCCAGc -5'
29068 5' -63.2 NC_006146.1 + 48025 0.67 0.598495
Target:  5'- gGGGagGCAc-GGCGGGCcggCuCGGGUCGu -3'
miRNA:   3'- gCCCg-CGUucUCGCCCGa--G-GCCCAGC- -5'
29068 5' -63.2 NC_006146.1 + 24367 0.67 0.598495
Target:  5'- aGuGGCGCAgggccagcuccAGGGCGcGGCgccuucgcucUCCGGGUUu -3'
miRNA:   3'- gC-CCGCGU-----------UCUCGC-CCG----------AGGCCCAGc -5'
29068 5' -63.2 NC_006146.1 + 17770 0.67 0.597536
Target:  5'- aCGGucacacuGCGCAAGAGCaugaGGGUcCCGGGcUCc -3'
miRNA:   3'- -GCC-------CGCGUUCUCG----CCCGaGGCCC-AGc -5'
29068 5' -63.2 NC_006146.1 + 40277 0.67 0.58892
Target:  5'- gGaGGCGCGGGcggaGGCGGGCcaaagaggCCGGG-Ca -3'
miRNA:   3'- gC-CCGCGUUC----UCGCCCGa-------GGCCCaGc -5'
29068 5' -63.2 NC_006146.1 + 137044 0.67 0.58892
Target:  5'- cCGGGUG--GGGGCcugGGGUUCCGGGg-- -3'
miRNA:   3'- -GCCCGCguUCUCG---CCCGAGGCCCagc -5'
29068 5' -63.2 NC_006146.1 + 20876 0.67 0.587008
Target:  5'- gGGGCGCAcgaugcuGGAGCGGGCcaaggccUUCGuGGagGc -3'
miRNA:   3'- gCCCGCGU-------UCUCGCCCG-------AGGC-CCagC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.