miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29068 5' -63.2 NC_006146.1 + 129 0.66 0.655226
Target:  5'- gGGGCuucgucacGCAAGGGUgauuucggagagGGGCUucgucacgcucggCUGGGUCGg -3'
miRNA:   3'- gCCCG--------CGUUCUCG------------CCCGA-------------GGCCCAGC- -5'
29068 5' -63.2 NC_006146.1 + 1076 0.66 0.645612
Target:  5'- aGGGUGauuUAGGAGagGGGCUucgucacgcucggCUGGGUCGg -3'
miRNA:   3'- gCCCGC---GUUCUCg-CCCGA-------------GGCCCAGC- -5'
29068 5' -63.2 NC_006146.1 + 2008 0.66 0.645612
Target:  5'- aGGGUGauuUAGGAGagGGGCUucgucacgcucggCUGGGUCGg -3'
miRNA:   3'- gCCCGC---GUUCUCg-CCCGA-------------GGCCCAGC- -5'
29068 5' -63.2 NC_006146.1 + 2941 0.66 0.645612
Target:  5'- aGGGUGauuUAGGAGagGGGCUucgucacgcucggCUGGGUCGg -3'
miRNA:   3'- gCCCGC---GUUCUCg-CCCGA-------------GGCCCAGC- -5'
29068 5' -63.2 NC_006146.1 + 12853 0.69 0.446246
Target:  5'- gGaGGCGCcuGGGGCGaGGCUggguggcugggcaggCCGGGUCu -3'
miRNA:   3'- gC-CCGCGu-UCUCGC-CCGA---------------GGCCCAGc -5'
29068 5' -63.2 NC_006146.1 + 14052 0.68 0.531314
Target:  5'- -aGGCGCAAGcGCcGGCUggcugcgguccucCCGGGUCu -3'
miRNA:   3'- gcCCGCGUUCuCGcCCGA-------------GGCCCAGc -5'
29068 5' -63.2 NC_006146.1 + 14818 0.66 0.636952
Target:  5'- cCGGGcCGgAGGAGggcacggucuCGGGC-CCGGGgccgCGg -3'
miRNA:   3'- -GCCC-GCgUUCUC----------GCCCGaGGCCCa---GC- -5'
29068 5' -63.2 NC_006146.1 + 17770 0.67 0.597536
Target:  5'- aCGGucacacuGCGCAAGAGCaugaGGGUcCCGGGcUCc -3'
miRNA:   3'- -GCC-------CGCGUUCUCG----CCCGaGGCCC-AGc -5'
29068 5' -63.2 NC_006146.1 + 19009 0.7 0.429305
Target:  5'- gGaGGCGCcuGGGCGaGGCUggguggcugggcaggCCGGGUCu -3'
miRNA:   3'- gC-CCGCGuuCUCGC-CCGA---------------GGCCCAGc -5'
29068 5' -63.2 NC_006146.1 + 20876 0.67 0.587008
Target:  5'- gGGGCGCAcgaugcuGGAGCGGGCcaaggccUUCGuGGagGc -3'
miRNA:   3'- gCCCGCGU-------UCUCGCCCG-------AGGC-CCagC- -5'
29068 5' -63.2 NC_006146.1 + 22087 0.7 0.429305
Target:  5'- gGaGGCGCcuGGGCGaGGCUggguggcugggcaggCCGGGUCu -3'
miRNA:   3'- gC-CCGCGuuCUCGC-CCGA---------------GGCCCAGc -5'
29068 5' -63.2 NC_006146.1 + 23724 0.67 0.56986
Target:  5'- cCGGGCGaAGGGGCGccGGUcugcgccgccgCCGGGUCa -3'
miRNA:   3'- -GCCCGCgUUCUCGC--CCGa----------GGCCCAGc -5'
29068 5' -63.2 NC_006146.1 + 24367 0.67 0.598495
Target:  5'- aGuGGCGCAgggccagcuccAGGGCGcGGCgccuucgcucUCCGGGUUu -3'
miRNA:   3'- gC-CCGCGU-----------UCUCGC-CCG----------AGGCCCAGc -5'
29068 5' -63.2 NC_006146.1 + 25165 0.7 0.429305
Target:  5'- gGaGGCGCcuGGGCGaGGCUggguggcugggcaggCCGGGUCu -3'
miRNA:   3'- gC-CCGCGuuCUCGC-CCGA---------------GGCCCAGc -5'
29068 5' -63.2 NC_006146.1 + 28243 0.7 0.429305
Target:  5'- gGaGGCGCcuGGGCGaGGCUggguggcugggcaggCCGGGUCu -3'
miRNA:   3'- gC-CCGCGuuCUCGC-CCGA---------------GGCCCAGc -5'
29068 5' -63.2 NC_006146.1 + 33207 0.66 0.627326
Target:  5'- cCGGGUGCuccuGGuGCuccgGGGCagCCGGGUgGc -3'
miRNA:   3'- -GCCCGCGu---UCuCG----CCCGa-GGCCCAgC- -5'
29068 5' -63.2 NC_006146.1 + 40277 0.67 0.58892
Target:  5'- gGaGGCGCGGGcggaGGCGGGCcaaagaggCCGGG-Ca -3'
miRNA:   3'- gC-CCGCGUUC----UCGCCCGa-------GGCCCaGc -5'
29068 5' -63.2 NC_006146.1 + 40912 0.73 0.274148
Target:  5'- cCGGGCGCGAuGGauGGUUCCaGGUCGc -3'
miRNA:   3'- -GCCCGCGUUcUCgcCCGAGGcCCAGC- -5'
29068 5' -63.2 NC_006146.1 + 41080 0.69 0.477649
Target:  5'- gGGGCGUGGcGGGUGGGC-CgCGGG-CGa -3'
miRNA:   3'- gCCCGCGUU-CUCGCCCGaG-GCCCaGC- -5'
29068 5' -63.2 NC_006146.1 + 42257 0.66 0.656186
Target:  5'- -cGGCGCgAGGAGCuGGCUCagcuGGG-CGa -3'
miRNA:   3'- gcCCGCG-UUCUCGcCCGAGg---CCCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.