miRNA display CGI


Results 21 - 40 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29068 5' -63.2 NC_006146.1 + 43588 0.76 0.168859
Target:  5'- cCGGGgaGCGGG-GCGGGaggCCGGGUCGg -3'
miRNA:   3'- -GCCCg-CGUUCuCGCCCga-GGCCCAGC- -5'
29068 5' -63.2 NC_006146.1 + 43618 0.67 0.579373
Target:  5'- uCGGGgGaagaGGGAGUGGGCggCGGGgCGu -3'
miRNA:   3'- -GCCCgCg---UUCUCGCCCGagGCCCaGC- -5'
29068 5' -63.2 NC_006146.1 + 44528 0.66 0.621553
Target:  5'- uGGGauccaugGCAggauauccuggaaaaGGGGCcgGGGCUCCGGGUgGc -3'
miRNA:   3'- gCCCg------CGU---------------UCUCG--CCCGAGGCCCAgC- -5'
29068 5' -63.2 NC_006146.1 + 46798 0.7 0.409485
Target:  5'- -cGGCGCGAGGGCaaaGGcCUCUGGGUUc -3'
miRNA:   3'- gcCCGCGUUCUCGc--CC-GAGGCCCAGc -5'
29068 5' -63.2 NC_006146.1 + 47042 0.71 0.37008
Target:  5'- uGGGUGCGAGAagGGGCcggucgCCGGuGUCGg -3'
miRNA:   3'- gCCCGCGUUCUcgCCCGa-----GGCC-CAGC- -5'
29068 5' -63.2 NC_006146.1 + 47829 0.67 0.560384
Target:  5'- uCGGGCuGCcAGAGCGcGGCUCuCGaGGa-- -3'
miRNA:   3'- -GCCCG-CGuUCUCGC-CCGAG-GC-CCagc -5'
29068 5' -63.2 NC_006146.1 + 48025 0.67 0.598495
Target:  5'- gGGGagGCAc-GGCGGGCcggCuCGGGUCGu -3'
miRNA:   3'- gCCCg-CGUucUCGCCCGa--G-GCCCAGC- -5'
29068 5' -63.2 NC_006146.1 + 48624 0.87 0.030731
Target:  5'- uCGGGUGCcguGGGGGCGGGCUCCGGG-CGg -3'
miRNA:   3'- -GCCCGCG---UUCUCGCCCGAGGCCCaGC- -5'
29068 5' -63.2 NC_006146.1 + 50179 0.67 0.57842
Target:  5'- gGGGCGUuuGcacuugcGGCGGGCUC-GGGUa- -3'
miRNA:   3'- gCCCGCGuuC-------UCGCCCGAGgCCCAgc -5'
29068 5' -63.2 NC_006146.1 + 50289 0.7 0.425963
Target:  5'- gGGGCGCAGGAGaucugucaGGcGCcgCCGGGcCu -3'
miRNA:   3'- gCCCGCGUUCUCg-------CC-CGa-GGCCCaGc -5'
29068 5' -63.2 NC_006146.1 + 51572 0.69 0.442828
Target:  5'- uGGGCGCcgccGGGAG-GGGC-CCGGGg-- -3'
miRNA:   3'- gCCCGCG----UUCUCgCCCGaGGCCCagc -5'
29068 5' -63.2 NC_006146.1 + 51681 0.68 0.486565
Target:  5'- gGGGgGCGacGGGGCGGGggcugaucgucCUCCGuGUCGg -3'
miRNA:   3'- gCCCgCGU--UCUCGCCC-----------GAGGCcCAGC- -5'
29068 5' -63.2 NC_006146.1 + 51832 0.66 0.656186
Target:  5'- gGGGCgGCGuggAGGG-GGGCUCgGGGcCu -3'
miRNA:   3'- gCCCG-CGU---UCUCgCCCGAGgCCCaGc -5'
29068 5' -63.2 NC_006146.1 + 53600 0.8 0.093991
Target:  5'- gCGGGCGUAuauguuuuaauaGGGGUGGuCUCCGGGUCGg -3'
miRNA:   3'- -GCCCGCGU------------UCUCGCCcGAGGCCCAGC- -5'
29068 5' -63.2 NC_006146.1 + 54690 0.7 0.408672
Target:  5'- gGuGGCGUAaaugagcucgaggGGAcgGCGGGC-CCGGGUCa -3'
miRNA:   3'- gC-CCGCGU-------------UCU--CGCCCGaGGCCCAGc -5'
29068 5' -63.2 NC_006146.1 + 55014 0.73 0.256376
Target:  5'- cCGGGCGgGaugGGGGCGGGCgggauggGGGUCGg -3'
miRNA:   3'- -GCCCGCgU---UCUCGCCCGagg----CCCAGC- -5'
29068 5' -63.2 NC_006146.1 + 60065 0.68 0.491952
Target:  5'- uCGGGCGCcgccucgucccguGGAGCuacGGGCaaucgCCGGGcCGg -3'
miRNA:   3'- -GCCCGCGu------------UCUCG---CCCGa----GGCCCaGC- -5'
29068 5' -63.2 NC_006146.1 + 61825 0.66 0.608092
Target:  5'- gGGGCGCugguGGGGGCagugGGGCUggugCCGGGa-- -3'
miRNA:   3'- gCCCGCG----UUCUCG----CCCGA----GGCCCagc -5'
29068 5' -63.2 NC_006146.1 + 64186 0.66 0.645612
Target:  5'- gGGGCaGCAGGAguugcaaggugucGCGGaGCUCCGGc--- -3'
miRNA:   3'- gCCCG-CGUUCU-------------CGCC-CGAGGCCcagc -5'
29068 5' -63.2 NC_006146.1 + 67001 0.73 0.280287
Target:  5'- gGGGUGUAGGAGauGGC-CCGGGUg- -3'
miRNA:   3'- gCCCGCGUUCUCgcCCGaGGCCCAgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.