miRNA display CGI


Results 41 - 60 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29068 5' -63.2 NC_006146.1 + 67345 0.67 0.599453
Target:  5'- cCGGGCGagcccauccuCGGGgUCCGGGUCc -3'
miRNA:   3'- -GCCCGCguucuc----GCCCgAGGCCCAGc -5'
29068 5' -63.2 NC_006146.1 + 68196 0.7 0.393411
Target:  5'- gCGGGCGC---AGC-GGCUCCGGGagGu -3'
miRNA:   3'- -GCCCGCGuucUCGcCCGAGGCCCagC- -5'
29068 5' -63.2 NC_006146.1 + 76894 0.66 0.634065
Target:  5'- cCGGGcCGCAcgugGGAGCcagaggugaccgcgGGGCUgcagCCGGGUg- -3'
miRNA:   3'- -GCCC-GCGU----UCUCG--------------CCCGA----GGCCCAgc -5'
29068 5' -63.2 NC_006146.1 + 77912 0.78 0.135641
Target:  5'- -aGGCGCAGGGGCGGGCggCCucgcaggugccggGGGUCGc -3'
miRNA:   3'- gcCCGCGUUCUCGCCCGa-GG-------------CCCAGC- -5'
29068 5' -63.2 NC_006146.1 + 78573 0.66 0.611935
Target:  5'- gCGGGUGCuguucugagccagggGAGAGgGGuGCUgCGaGGUCa -3'
miRNA:   3'- -GCCCGCG---------------UUCUCgCC-CGAgGC-CCAGc -5'
29068 5' -63.2 NC_006146.1 + 84088 0.72 0.32633
Target:  5'- aCGGGCGagaauGGGGCGGGCUCauGGcCa -3'
miRNA:   3'- -GCCCGCgu---UCUCGCCCGAGgcCCaGc -5'
29068 5' -63.2 NC_006146.1 + 90545 0.71 0.340476
Target:  5'- cCGGaGCGguGGAGCaGGGC-CCGGGa-- -3'
miRNA:   3'- -GCC-CGCguUCUCG-CCCGaGGCCCagc -5'
29068 5' -63.2 NC_006146.1 + 95459 0.72 0.32633
Target:  5'- aGGGCaGgAAGGGgGGcucugagaGCUCCGGGUCa -3'
miRNA:   3'- gCCCG-CgUUCUCgCC--------CGAGGCCCAGc -5'
29068 5' -63.2 NC_006146.1 + 98302 0.66 0.646574
Target:  5'- gGGGC-UGAGGGCGuGCUCCGuGGcCGu -3'
miRNA:   3'- gCCCGcGUUCUCGCcCGAGGC-CCaGC- -5'
29068 5' -63.2 NC_006146.1 + 99913 1.07 0.001095
Target:  5'- cCGGGCGCAAGAGCGGGCUCCGGGUCGc -3'
miRNA:   3'- -GCCCGCGUUCUCGCCCGAGGCCCAGC- -5'
29068 5' -63.2 NC_006146.1 + 100000 0.7 0.401397
Target:  5'- uCGGGauCGGGAGCGGGCacgUCGGGaggCGg -3'
miRNA:   3'- -GCCCgcGUUCUCGCCCGa--GGCCCa--GC- -5'
29068 5' -63.2 NC_006146.1 + 103672 0.68 0.522974
Target:  5'- gCGGGCaucuGGGGCGGGCggUCGaGGUCu -3'
miRNA:   3'- -GCCCGcgu-UCUCGCCCGa-GGC-CCAGc -5'
29068 5' -63.2 NC_006146.1 + 104047 0.67 0.559439
Target:  5'- gGGGcCGCAaauugcaaaaaguAGAGCGGG-UCCGaucGGUCa -3'
miRNA:   3'- gCCC-GCGU-------------UCUCGCCCgAGGC---CCAGc -5'
29068 5' -63.2 NC_006146.1 + 104980 0.67 0.579373
Target:  5'- gGGGCuCccGAGgGGGCUCUGGGg-- -3'
miRNA:   3'- gCCCGcGuuCUCgCCCGAGGCCCagc -5'
29068 5' -63.2 NC_006146.1 + 110886 0.71 0.347714
Target:  5'- uCGGGCGCA--GGCGGGgaCgGGGcCGc -3'
miRNA:   3'- -GCCCGCGUucUCGCCCgaGgCCCaGC- -5'
29068 5' -63.2 NC_006146.1 + 111342 0.66 0.646574
Target:  5'- uGGGCGCAAcccgaGGUGGGCaUCaGGG-CGa -3'
miRNA:   3'- gCCCGCGUUc----UCGCCCG-AGgCCCaGC- -5'
29068 5' -63.2 NC_006146.1 + 120693 0.66 0.660027
Target:  5'- gCGGGUGCAcGGGCGGacGCuggagcagcaccugaUCCGGGa-- -3'
miRNA:   3'- -GCCCGCGUuCUCGCC--CG---------------AGGCCCagc -5'
29068 5' -63.2 NC_006146.1 + 123162 0.67 0.57842
Target:  5'- aGGGCGCGcgaGGAGgcccCGGacgacgaGCUCCGGG-CGc -3'
miRNA:   3'- gCCCGCGU---UCUC----GCC-------CGAGGCCCaGC- -5'
29068 5' -63.2 NC_006146.1 + 123922 0.69 0.460064
Target:  5'- aCGGGCGCAAuuccuGGC-GGCggCCGGGcCGg -3'
miRNA:   3'- -GCCCGCGUUc----UCGcCCGa-GGCCCaGC- -5'
29068 5' -63.2 NC_006146.1 + 126036 0.66 0.636952
Target:  5'- uGGGC-CGGGAGggacUGGGCUCCcuuGGGUa- -3'
miRNA:   3'- gCCCGcGUUCUC----GCCCGAGG---CCCAgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.