miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29068 5' -63.2 NC_006146.1 + 170598 0.69 0.477649
Target:  5'- uGGGCGUGGcGAGCgcgccGGGCccgcccCCGGGUCu -3'
miRNA:   3'- gCCCGCGUU-CUCG-----CCCGa-----GGCCCAGc -5'
29068 5' -63.2 NC_006146.1 + 170416 0.66 0.627326
Target:  5'- gGGGCGgAGGGGgGGGUcCCGcGGggccCGg -3'
miRNA:   3'- gCCCGCgUUCUCgCCCGaGGC-CCa---GC- -5'
29068 5' -63.2 NC_006146.1 + 170305 0.68 0.495559
Target:  5'- aGGGgGCAGG-GCuGGCgCCGGGcCGc -3'
miRNA:   3'- gCCCgCGUUCuCGcCCGaGGCCCaGC- -5'
29068 5' -63.2 NC_006146.1 + 170235 0.71 0.37008
Target:  5'- gGGGCGgGGGgucgGGCGGGCaugcUCCGGGguaaCGa -3'
miRNA:   3'- gCCCGCgUUC----UCGCCCG----AGGCCCa---GC- -5'
29068 5' -63.2 NC_006146.1 + 170172 0.7 0.393411
Target:  5'- cCGGGgGCu-GAGgGGGCUCCcgaGGG-CGg -3'
miRNA:   3'- -GCCCgCGuuCUCgCCCGAGG---CCCaGC- -5'
29068 5' -63.2 NC_006146.1 + 169724 0.66 0.634064
Target:  5'- uGGGCGCucagaucggcgcggGGGAGCcccgGGGCggcCCGGGg-- -3'
miRNA:   3'- gCCCGCG--------------UUCUCG----CCCGa--GGCCCagc -5'
29068 5' -63.2 NC_006146.1 + 169666 0.7 0.386312
Target:  5'- uGGGCGU---GGCGGGCgcgcguggcccgcccCCGGGUCu -3'
miRNA:   3'- gCCCGCGuucUCGCCCGa--------------GGCCCAGc -5'
29068 5' -63.2 NC_006146.1 + 169485 0.66 0.627326
Target:  5'- gGGGCGgAGGGGgGGGUcCCGcGGggccCGg -3'
miRNA:   3'- gCCCGCgUUCUCgCCCGaGGC-CCa---GC- -5'
29068 5' -63.2 NC_006146.1 + 169374 0.68 0.495559
Target:  5'- aGGGgGCAGG-GCuGGCgCCGGGcCGc -3'
miRNA:   3'- gCCCgCGUUCuCGcCCGaGGCCCaGC- -5'
29068 5' -63.2 NC_006146.1 + 169304 0.71 0.37008
Target:  5'- gGGGCGgGGGgucgGGCGGGCaugcUCCGGGguaaCGa -3'
miRNA:   3'- gCCCGCgUUC----UCGCCCG----AGGCCCa---GC- -5'
29068 5' -63.2 NC_006146.1 + 169241 0.7 0.393411
Target:  5'- cCGGGgGCu-GAGgGGGCUCCcgaGGG-CGg -3'
miRNA:   3'- -GCCCgCGuuCUCgCCCGAGG---CCCaGC- -5'
29068 5' -63.2 NC_006146.1 + 168792 0.66 0.634064
Target:  5'- uGGGCGCucagaucggcgcggGGGAGCcccgGGGCggcCCGGGg-- -3'
miRNA:   3'- gCCCGCG--------------UUCUCG----CCCGa--GGCCCagc -5'
29068 5' -63.2 NC_006146.1 + 168734 0.7 0.386312
Target:  5'- uGGGCGU---GGCGGGCgcgcguggcccgcccCCGGGUCu -3'
miRNA:   3'- gCCCGCGuucUCGCCCGa--------------GGCCCAGc -5'
29068 5' -63.2 NC_006146.1 + 168553 0.66 0.627326
Target:  5'- gGGGCGgAGGGGgGGGUcCCGcGGggccCGg -3'
miRNA:   3'- gCCCGCgUUCUCgCCCGaGGC-CCa---GC- -5'
29068 5' -63.2 NC_006146.1 + 168442 0.68 0.495559
Target:  5'- aGGGgGCAGG-GCuGGCgCCGGGcCGc -3'
miRNA:   3'- gCCCgCGUUCuCGcCCGaGGCCCaGC- -5'
29068 5' -63.2 NC_006146.1 + 168372 0.71 0.37008
Target:  5'- gGGGCGgGGGgucgGGCGGGCaugcUCCGGGguaaCGa -3'
miRNA:   3'- gCCCGCgUUC----UCGCCCG----AGGCCCa---GC- -5'
29068 5' -63.2 NC_006146.1 + 168309 0.7 0.393411
Target:  5'- cCGGGgGCu-GAGgGGGCUCCcgaGGG-CGg -3'
miRNA:   3'- -GCCCgCGuuCUCgCCCGAGG---CCCaGC- -5'
29068 5' -63.2 NC_006146.1 + 167860 0.66 0.634064
Target:  5'- uGGGCGCucagaucggcgcggGGGAGCcccgGGGCggcCCGGGg-- -3'
miRNA:   3'- gCCCGCG--------------UUCUCG----CCCGa--GGCCCagc -5'
29068 5' -63.2 NC_006146.1 + 167802 0.7 0.386312
Target:  5'- uGGGCGU---GGCGGGCgcgcguggcccgcccCCGGGUCu -3'
miRNA:   3'- gCCCGCGuucUCGCCCGa--------------GGCCCAGc -5'
29068 5' -63.2 NC_006146.1 + 167754 0.68 0.486565
Target:  5'- aGGGCGCAGGGGCcggguGGGCgcgCauGGcUCGa -3'
miRNA:   3'- gCCCGCGUUCUCG-----CCCGa--GgcCC-AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.