miRNA display CGI


Results 21 - 40 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29068 5' -63.2 NC_006146.1 + 167621 0.66 0.627326
Target:  5'- gGGGCGgAGGGGgGGGUcCCGcGGggccCGg -3'
miRNA:   3'- gCCCGCgUUCUCgCCCGaGGC-CCa---GC- -5'
29068 5' -63.2 NC_006146.1 + 167510 0.68 0.495559
Target:  5'- aGGGgGCAGG-GCuGGCgCCGGGcCGc -3'
miRNA:   3'- gCCCgCGUUCuCGcCCGaGGCCCaGC- -5'
29068 5' -63.2 NC_006146.1 + 167440 0.71 0.37008
Target:  5'- gGGGCGgGGGgucgGGCGGGCaugcUCCGGGguaaCGa -3'
miRNA:   3'- gCCCGCgUUC----UCGCCCG----AGGCCCa---GC- -5'
29068 5' -63.2 NC_006146.1 + 167377 0.7 0.393411
Target:  5'- cCGGGgGCu-GAGgGGGCUCCcgaGGG-CGg -3'
miRNA:   3'- -GCCCgCGuuCUCgCCCGAGG---CCCaGC- -5'
29068 5' -63.2 NC_006146.1 + 162379 0.68 0.522975
Target:  5'- aGGGUGCAGGAcGgGGGCUuugccCUGGGa-- -3'
miRNA:   3'- gCCCGCGUUCU-CgCCCGA-----GGCCCagc -5'
29068 5' -63.2 NC_006146.1 + 160436 0.68 0.540636
Target:  5'- uGGGCGguGGcccccaucacgaaGGCGGcGCUCuCGuGGUCa -3'
miRNA:   3'- gCCCGCguUC-------------UCGCC-CGAG-GC-CCAGc -5'
29068 5' -63.2 NC_006146.1 + 158573 0.68 0.486565
Target:  5'- aGGG-GCGAGgggacugaGGCGGGCcugaagcCCGGGUUGa -3'
miRNA:   3'- gCCCgCGUUC--------UCGCCCGa------GGCCCAGC- -5'
29068 5' -63.2 NC_006146.1 + 157711 0.67 0.583188
Target:  5'- gGaGGCGCccGGAGCgaggccgggcaggccGGGCaggCCGGGUCu -3'
miRNA:   3'- gC-CCGCGu-UCUCG---------------CCCGa--GGCCCAGc -5'
29068 5' -63.2 NC_006146.1 + 157614 0.68 0.513768
Target:  5'- uGGGgGUAGucgcGGGCGGGCaccgCCuGGGUCu -3'
miRNA:   3'- gCCCgCGUU----CUCGCCCGa---GG-CCCAGc -5'
29068 5' -63.2 NC_006146.1 + 157360 0.67 0.560385
Target:  5'- cCGGGCGgGcGGGGacgGGGCUgcUCGGGUCc -3'
miRNA:   3'- -GCCCGCgU-UCUCg--CCCGA--GGCCCAGc -5'
29068 5' -63.2 NC_006146.1 + 156674 0.66 0.636952
Target:  5'- uGGGCGagguuuGGGGC-GGCUggGGGUCGg -3'
miRNA:   3'- gCCCGCgu----UCUCGcCCGAggCCCAGC- -5'
29068 5' -63.2 NC_006146.1 + 155552 0.73 0.274148
Target:  5'- aGGGCGUuGGAGcCGGGCUCgcgCGGGgCGc -3'
miRNA:   3'- gCCCGCGuUCUC-GCCCGAG---GCCCaGC- -5'
29068 5' -63.2 NC_006146.1 + 155494 0.68 0.486565
Target:  5'- aGGG-GCGAGgggacugaGGCGGGCcugaagcCCGGGUUGa -3'
miRNA:   3'- gCCCgCGUUC--------UCGCCCGa------GGCCCAGC- -5'
29068 5' -63.2 NC_006146.1 + 154634 0.67 0.583188
Target:  5'- gGaGGCGCccGGAGCgaggccgggcaggccGGGCaggCCGGGUCu -3'
miRNA:   3'- gC-CCGCGu-UCUCG---------------CCCGa--GGCCCAGc -5'
29068 5' -63.2 NC_006146.1 + 154282 0.67 0.560385
Target:  5'- cCGGGCGgGcGGGGacgGGGCUgcUCGGGUCc -3'
miRNA:   3'- -GCCCGCgU-UCUCg--CCCGA--GGCCCAGc -5'
29068 5' -63.2 NC_006146.1 + 153538 0.66 0.635989
Target:  5'- gGGGCGUggGgcugcuugggaacGGUGGaGCUgCCGuGGUCa -3'
miRNA:   3'- gCCCGCGuuC-------------UCGCC-CGA-GGC-CCAGc -5'
29068 5' -63.2 NC_006146.1 + 152416 0.68 0.486565
Target:  5'- aGGG-GCGAGgggacugaGGCGGGCcugaagcCCGGGUUGa -3'
miRNA:   3'- gCCCgCGUUC--------UCGCCCGa------GGCCCAGC- -5'
29068 5' -63.2 NC_006146.1 + 151556 0.67 0.583188
Target:  5'- gGaGGCGCccGGAGCgaggccgggcaggccGGGCaggCCGGGUCu -3'
miRNA:   3'- gC-CCGCGu-UCUCG---------------CCCGa--GGCCCAGc -5'
29068 5' -63.2 NC_006146.1 + 151204 0.67 0.560385
Target:  5'- cCGGGCGgGcGGGGacgGGGCUgcUCGGGUCc -3'
miRNA:   3'- -GCCCGCgU-UCUCg--CCCGA--GGCCCAGc -5'
29068 5' -63.2 NC_006146.1 + 149338 0.68 0.486565
Target:  5'- aGGG-GCGAGgggacugaGGCGGGCcugaagcCCGGGUUGa -3'
miRNA:   3'- gCCCgCGUUC--------UCGCCCGa------GGCCCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.