Results 1 - 20 of 166 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29068 | 5' | -63.2 | NC_006146.1 | + | 99913 | 1.07 | 0.001095 |
Target: 5'- cCGGGCGCAAGAGCGGGCUCCGGGUCGc -3' miRNA: 3'- -GCCCGCGUUCUCGCCCGAGGCCCAGC- -5' |
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29068 | 5' | -63.2 | NC_006146.1 | + | 167377 | 0.7 | 0.393411 |
Target: 5'- cCGGGgGCu-GAGgGGGCUCCcgaGGG-CGg -3' miRNA: 3'- -GCCCgCGuuCUCgCCCGAGG---CCCaGC- -5' |
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29068 | 5' | -63.2 | NC_006146.1 | + | 169241 | 0.7 | 0.393411 |
Target: 5'- cCGGGgGCu-GAGgGGGCUCCcgaGGG-CGg -3' miRNA: 3'- -GCCCgCGuuCUCgCCCGAGG---CCCaGC- -5' |
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29068 | 5' | -63.2 | NC_006146.1 | + | 120693 | 0.66 | 0.660027 |
Target: 5'- gCGGGUGCAcGGGCGGacGCuggagcagcaccugaUCCGGGa-- -3' miRNA: 3'- -GCCCGCGUuCUCGCC--CG---------------AGGCCCagc -5' |
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29068 | 5' | -63.2 | NC_006146.1 | + | 55014 | 0.73 | 0.256376 |
Target: 5'- cCGGGCGgGaugGGGGCGGGCgggauggGGGUCGg -3' miRNA: 3'- -GCCCGCgU---UCUCGCCCGagg----CCCAGC- -5' |
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29068 | 5' | -63.2 | NC_006146.1 | + | 155552 | 0.73 | 0.274148 |
Target: 5'- aGGGCGUuGGAGcCGGGCUCgcgCGGGgCGc -3' miRNA: 3'- gCCCGCGuUCUC-GCCCGAG---GCCCaGC- -5' |
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29068 | 5' | -63.2 | NC_006146.1 | + | 95459 | 0.72 | 0.32633 |
Target: 5'- aGGGCaGgAAGGGgGGcucugagaGCUCCGGGUCa -3' miRNA: 3'- gCCCG-CgUUCUCgCC--------CGAGGCCCAGc -5' |
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29068 | 5' | -63.2 | NC_006146.1 | + | 90545 | 0.71 | 0.340476 |
Target: 5'- cCGGaGCGguGGAGCaGGGC-CCGGGa-- -3' miRNA: 3'- -GCC-CGCguUCUCG-CCCGaGGCCCagc -5' |
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29068 | 5' | -63.2 | NC_006146.1 | + | 168372 | 0.71 | 0.37008 |
Target: 5'- gGGGCGgGGGgucgGGCGGGCaugcUCCGGGguaaCGa -3' miRNA: 3'- gCCCGCgUUC----UCGCCCG----AGGCCCa---GC- -5' |
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29068 | 5' | -63.2 | NC_006146.1 | + | 169666 | 0.7 | 0.386312 |
Target: 5'- uGGGCGU---GGCGGGCgcgcguggcccgcccCCGGGUCu -3' miRNA: 3'- gCCCGCGuucUCGCCCGa--------------GGCCCAGc -5' |
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29068 | 5' | -63.2 | NC_006146.1 | + | 170235 | 0.71 | 0.37008 |
Target: 5'- gGGGCGgGGGgucgGGCGGGCaugcUCCGGGguaaCGa -3' miRNA: 3'- gCCCGCgUUC----UCGCCCG----AGGCCCa---GC- -5' |
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29068 | 5' | -63.2 | NC_006146.1 | + | 167440 | 0.71 | 0.37008 |
Target: 5'- gGGGCGgGGGgucgGGCGGGCaugcUCCGGGguaaCGa -3' miRNA: 3'- gCCCGCgUUC----UCGCCCG----AGGCCCa---GC- -5' |
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29068 | 5' | -63.2 | NC_006146.1 | + | 48624 | 0.87 | 0.030731 |
Target: 5'- uCGGGUGCcguGGGGGCGGGCUCCGGG-CGg -3' miRNA: 3'- -GCCCGCG---UUCUCGCCCGAGGCCCaGC- -5' |
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29068 | 5' | -63.2 | NC_006146.1 | + | 167802 | 0.7 | 0.386312 |
Target: 5'- uGGGCGU---GGCGGGCgcgcguggcccgcccCCGGGUCu -3' miRNA: 3'- gCCCGCGuucUCGCCCGa--------------GGCCCAGc -5' |
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29068 | 5' | -63.2 | NC_006146.1 | + | 53600 | 0.8 | 0.093991 |
Target: 5'- gCGGGCGUAuauguuuuaauaGGGGUGGuCUCCGGGUCGg -3' miRNA: 3'- -GCCCGCGU------------UCUCGCCcGAGGCCCAGC- -5' |
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29068 | 5' | -63.2 | NC_006146.1 | + | 47042 | 0.71 | 0.37008 |
Target: 5'- uGGGUGCGAGAagGGGCcggucgCCGGuGUCGg -3' miRNA: 3'- gCCCGCGUUCUcgCCCGa-----GGCC-CAGC- -5' |
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29068 | 5' | -63.2 | NC_006146.1 | + | 168734 | 0.7 | 0.386312 |
Target: 5'- uGGGCGU---GGCGGGCgcgcguggcccgcccCCGGGUCu -3' miRNA: 3'- gCCCGCGuucUCGCCCGa--------------GGCCCAGc -5' |
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29068 | 5' | -63.2 | NC_006146.1 | + | 168309 | 0.7 | 0.393411 |
Target: 5'- cCGGGgGCu-GAGgGGGCUCCcgaGGG-CGg -3' miRNA: 3'- -GCCCgCGuuCUCgCCCGAGG---CCCaGC- -5' |
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29068 | 5' | -63.2 | NC_006146.1 | + | 129117 | 0.74 | 0.223673 |
Target: 5'- aGGGCcUGAGAGCGGGCgcCCGGG-CGc -3' miRNA: 3'- gCCCGcGUUCUCGCCCGa-GGCCCaGC- -5' |
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29068 | 5' | -63.2 | NC_006146.1 | + | 67001 | 0.73 | 0.280287 |
Target: 5'- gGGGUGUAGGAGauGGC-CCGGGUg- -3' miRNA: 3'- gCCCGCGUUCUCgcCCGaGGCCCAgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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