miRNA display CGI


Results 21 - 40 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29068 5' -63.2 NC_006146.1 + 54690 0.7 0.408672
Target:  5'- gGuGGCGUAaaugagcucgaggGGAcgGCGGGC-CCGGGUCa -3'
miRNA:   3'- gC-CCGCGU-------------UCU--CGCCCGaGGCCCAGc -5'
29068 5' -63.2 NC_006146.1 + 169241 0.7 0.393411
Target:  5'- cCGGGgGCu-GAGgGGGCUCCcgaGGG-CGg -3'
miRNA:   3'- -GCCCgCGuuCUCgCCCGAGG---CCCaGC- -5'
29068 5' -63.2 NC_006146.1 + 167440 0.71 0.37008
Target:  5'- gGGGCGgGGGgucgGGCGGGCaugcUCCGGGguaaCGa -3'
miRNA:   3'- gCCCGCgUUC----UCGCCCG----AGGCCCa---GC- -5'
29068 5' -63.2 NC_006146.1 + 129117 0.74 0.223673
Target:  5'- aGGGCcUGAGAGCGGGCgcCCGGG-CGc -3'
miRNA:   3'- gCCCGcGUUCUCGCCCGa-GGCCCaGC- -5'
29068 5' -63.2 NC_006146.1 + 60065 0.68 0.491952
Target:  5'- uCGGGCGCcgccucgucccguGGAGCuacGGGCaaucgCCGGGcCGg -3'
miRNA:   3'- -GCCCGCGu------------UCUCG---CCCGa----GGCCCaGC- -5'
29068 5' -63.2 NC_006146.1 + 25165 0.7 0.429305
Target:  5'- gGaGGCGCcuGGGCGaGGCUggguggcugggcaggCCGGGUCu -3'
miRNA:   3'- gC-CCGCGuuCUCGC-CCGA---------------GGCCCAGc -5'
29068 5' -63.2 NC_006146.1 + 167377 0.7 0.393411
Target:  5'- cCGGGgGCu-GAGgGGGCUCCcgaGGG-CGg -3'
miRNA:   3'- -GCCCgCGuuCUCgCCCGAGG---CCCaGC- -5'
29068 5' -63.2 NC_006146.1 + 53600 0.8 0.093991
Target:  5'- gCGGGCGUAuauguuuuaauaGGGGUGGuCUCCGGGUCGg -3'
miRNA:   3'- -GCCCGCGU------------UCUCGCCcGAGGCCCAGC- -5'
29068 5' -63.2 NC_006146.1 + 22087 0.7 0.429305
Target:  5'- gGaGGCGCcuGGGCGaGGCUggguggcugggcaggCCGGGUCu -3'
miRNA:   3'- gC-CCGCGuuCUCGC-CCGA---------------GGCCCAGc -5'
29068 5' -63.2 NC_006146.1 + 48624 0.87 0.030731
Target:  5'- uCGGGUGCcguGGGGGCGGGCUCCGGG-CGg -3'
miRNA:   3'- -GCCCGCG---UUCUCGCCCGAGGCCCaGC- -5'
29068 5' -63.2 NC_006146.1 + 168309 0.7 0.393411
Target:  5'- cCGGGgGCu-GAGgGGGCUCCcgaGGG-CGg -3'
miRNA:   3'- -GCCCgCGuuCUCgCCCGAGG---CCCaGC- -5'
29068 5' -63.2 NC_006146.1 + 46798 0.7 0.409485
Target:  5'- -cGGCGCGAGGGCaaaGGcCUCUGGGUUc -3'
miRNA:   3'- gcCCGCGUUCUCGc--CC-GAGGCCCAGc -5'
29068 5' -63.2 NC_006146.1 + 167802 0.7 0.386312
Target:  5'- uGGGCGU---GGCGGGCgcgcguggcccgcccCCGGGUCu -3'
miRNA:   3'- gCCCGCGuucUCGCCCGa--------------GGCCCAGc -5'
29068 5' -63.2 NC_006146.1 + 168372 0.71 0.37008
Target:  5'- gGGGCGgGGGgucgGGCGGGCaugcUCCGGGguaaCGa -3'
miRNA:   3'- gCCCGCgUUC----UCGCCCG----AGGCCCa---GC- -5'
29068 5' -63.2 NC_006146.1 + 95459 0.72 0.32633
Target:  5'- aGGGCaGgAAGGGgGGcucugagaGCUCCGGGUCa -3'
miRNA:   3'- gCCCG-CgUUCUCgCC--------CGAGGCCCAGc -5'
29068 5' -63.2 NC_006146.1 + 55014 0.73 0.256376
Target:  5'- cCGGGCGgGaugGGGGCGGGCgggauggGGGUCGg -3'
miRNA:   3'- -GCCCGCgU---UCUCGCCCGagg----CCCAGC- -5'
29068 5' -63.2 NC_006146.1 + 170305 0.68 0.495559
Target:  5'- aGGGgGCAGG-GCuGGCgCCGGGcCGc -3'
miRNA:   3'- gCCCgCGUUCuCGcCCGaGGCCCaGC- -5'
29068 5' -63.2 NC_006146.1 + 167510 0.68 0.495559
Target:  5'- aGGGgGCAGG-GCuGGCgCCGGGcCGc -3'
miRNA:   3'- gCCCgCGUUCuCGcCCGaGGCCCaGC- -5'
29068 5' -63.2 NC_006146.1 + 41080 0.69 0.477649
Target:  5'- gGGGCGUGGcGGGUGGGC-CgCGGG-CGa -3'
miRNA:   3'- gCCCGCGUU-CUCGCCCGaG-GCCCaGC- -5'
29068 5' -63.2 NC_006146.1 + 28243 0.7 0.429305
Target:  5'- gGaGGCGCcuGGGCGaGGCUggguggcugggcaggCCGGGUCu -3'
miRNA:   3'- gC-CCGCGuuCUCGC-CCGA---------------GGCCCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.