Results 1 - 20 of 22 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29069 | 3' | -47.5 | NC_006146.1 | + | 9550 | 0.73 | 0.96065 |
Target: 5'- aGUCAGGUCuGAGAGGUUgCUgcgCUUGGUu -3' miRNA: 3'- -CAGUCCAGuUUUUCUAG-GAa--GAGCCG- -5' |
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29069 | 3' | -47.5 | NC_006146.1 | + | 10027 | 0.66 | 0.999845 |
Target: 5'- cUCAGGgaccuGAGAGAUgCCUUCagUCGGg -3' miRNA: 3'- cAGUCCagu--UUUUCUA-GGAAG--AGCCg -5' |
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29069 | 3' | -47.5 | NC_006146.1 | + | 50327 | 0.67 | 0.999676 |
Target: 5'- -cCAGGUCAAAcuugccAUCCgcggcCUCGGCc -3' miRNA: 3'- caGUCCAGUUUuuc---UAGGaa---GAGCCG- -5' |
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29069 | 3' | -47.5 | NC_006146.1 | + | 55079 | 0.76 | 0.875495 |
Target: 5'- gGUCAGGaCGGAcGAGAUCCU-CUCGGa -3' miRNA: 3'- -CAGUCCaGUUU-UUCUAGGAaGAGCCg -5' |
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29069 | 3' | -47.5 | NC_006146.1 | + | 57994 | 0.66 | 0.9998 |
Target: 5'- -cCAGGaCGAGcugGAGGcCCgggUCUCGGCc -3' miRNA: 3'- caGUCCaGUUU---UUCUaGGa--AGAGCCG- -5' |
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29069 | 3' | -47.5 | NC_006146.1 | + | 70030 | 0.67 | 0.999591 |
Target: 5'- -aCAGGUCcguGAGacccGAGA-CCUUC-CGGCg -3' miRNA: 3'- caGUCCAG---UUU----UUCUaGGAAGaGCCG- -5' |
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29069 | 3' | -47.5 | NC_006146.1 | + | 76051 | 0.66 | 0.999845 |
Target: 5'- -cCAGGUCAAcAAGAUCCg---CGaGUg -3' miRNA: 3'- caGUCCAGUUuUUCUAGGaagaGC-CG- -5' |
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29069 | 3' | -47.5 | NC_006146.1 | + | 78610 | 0.72 | 0.973699 |
Target: 5'- --gAGGUCAGAAccAGAUgCUUCUUGGa -3' miRNA: 3'- cagUCCAGUUUU--UCUAgGAAGAGCCg -5' |
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29069 | 3' | -47.5 | NC_006146.1 | + | 80240 | 0.75 | 0.910418 |
Target: 5'- -aCGGGggCAagaaacGAAAGggCCUUCUCGGCu -3' miRNA: 3'- caGUCCa-GU------UUUUCuaGGAAGAGCCG- -5' |
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29069 | 3' | -47.5 | NC_006146.1 | + | 95676 | 0.72 | 0.981181 |
Target: 5'- gGUCAGGcUCuuuGAGAUCCUgCagGGCa -3' miRNA: 3'- -CAGUCC-AGuuuUUCUAGGAaGagCCG- -5' |
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29069 | 3' | -47.5 | NC_006146.1 | + | 98995 | 0.68 | 0.998226 |
Target: 5'- -cCAGGUCAGaggccgcgcgcagGAGGGUCCgcgUgaCGGCc -3' miRNA: 3'- caGUCCAGUU-------------UUUCUAGGa--AgaGCCG- -5' |
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29069 | 3' | -47.5 | NC_006146.1 | + | 100019 | 0.67 | 0.999676 |
Target: 5'- cGUCGGGaggCGGcgGGGUCCg---CGGCu -3' miRNA: 3'- -CAGUCCa--GUUuuUCUAGGaagaGCCG- -5' |
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29069 | 3' | -47.5 | NC_006146.1 | + | 100141 | 1.14 | 0.010237 |
Target: 5'- aGUCAGGUCAAAAAGAUCCUUCUCGGCg -3' miRNA: 3'- -CAGUCCAGUUUUUCUAGGAAGAGCCG- -5' |
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29069 | 3' | -47.5 | NC_006146.1 | + | 100877 | 0.67 | 0.999362 |
Target: 5'- cUCGGGUCucacGGA-CCUgucggccugggUCUCGGCc -3' miRNA: 3'- cAGUCCAGuuuuUCUaGGA-----------AGAGCCG- -5' |
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29069 | 3' | -47.5 | NC_006146.1 | + | 101411 | 0.74 | 0.938813 |
Target: 5'- gGUUAGGUaCGAGgcGGUCUUcgUCUCGGCc -3' miRNA: 3'- -CAGUCCA-GUUUuuCUAGGA--AGAGCCG- -5' |
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29069 | 3' | -47.5 | NC_006146.1 | + | 102326 | 0.68 | 0.998814 |
Target: 5'- -cCGGGggCAGGcccAGAUCgaUCUCGGCu -3' miRNA: 3'- caGUCCa-GUUUu--UCUAGgaAGAGCCG- -5' |
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29069 | 3' | -47.5 | NC_006146.1 | + | 109279 | 0.68 | 0.998259 |
Target: 5'- uUCAGGUCGuagcuGGGAgggaUCUCGGCc -3' miRNA: 3'- cAGUCCAGUuu---UUCUaggaAGAGCCG- -5' |
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29069 | 3' | -47.5 | NC_006146.1 | + | 110598 | 0.78 | 0.816693 |
Target: 5'- gGUCAGGUCGGugGGGUCCcagCUCaGCa -3' miRNA: 3'- -CAGUCCAGUUuuUCUAGGaa-GAGcCG- -5' |
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29069 | 3' | -47.5 | NC_006146.1 | + | 122993 | 0.66 | 0.999909 |
Target: 5'- -cCAGGcCAcgGGGGacUUCUUCUCGGa -3' miRNA: 3'- caGUCCaGUuuUUCU--AGGAAGAGCCg -5' |
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29069 | 3' | -47.5 | NC_006146.1 | + | 125457 | 0.68 | 0.999029 |
Target: 5'- gGUCAGGUCcccAAAGAcagCCUUCa-GGUg -3' miRNA: 3'- -CAGUCCAGuu-UUUCUa--GGAAGagCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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