miRNA display CGI


Results 1 - 20 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29069 5' -59.9 NC_006146.1 + 33348 0.66 0.786511
Target:  5'- cGGGGCAgccggguggccgccgGUGGGUCcgccgggccgcugCCCCGCUCCg--- -3'
miRNA:   3'- -CCCCGU---------------UAUUCGG-------------GGGGCGAGGagga -5'
29069 5' -59.9 NC_006146.1 + 127402 0.66 0.783835
Target:  5'- uGGGGC--UGGGCCCCgCCGCcggagCCg -3'
miRNA:   3'- -CCCCGuuAUUCGGGG-GGCGagga-GGa -5'
29069 5' -59.9 NC_006146.1 + 26366 0.66 0.783835
Target:  5'- -aGGCc--AGGCCCUCCG-UCCUCCc -3'
miRNA:   3'- ccCCGuuaUUCGGGGGGCgAGGAGGa -5'
29069 5' -59.9 NC_006146.1 + 56555 0.66 0.783835
Target:  5'- cGGGCc---AGgCCCCCGUccaCCUCCg -3'
miRNA:   3'- cCCCGuuauUCgGGGGGCGa--GGAGGa -5'
29069 5' -59.9 NC_006146.1 + 49215 0.66 0.783835
Target:  5'- uGGGGUccagGAUAcggucgauGCCCuCCUGCaCCUCCg -3'
miRNA:   3'- -CCCCG----UUAUu-------CGGG-GGGCGaGGAGGa -5'
29069 5' -59.9 NC_006146.1 + 17132 0.66 0.783835
Target:  5'- -aGGCc--AGGCCCUCCG-UCCUCCc -3'
miRNA:   3'- ccCCGuuaUUCGGGGGGCgAGGAGGa -5'
29069 5' -59.9 NC_006146.1 + 29444 0.66 0.783835
Target:  5'- -aGGCc--AGGCCCUCCG-UCCUCCc -3'
miRNA:   3'- ccCCGuuaUUCGGGGGGCgAGGAGGa -5'
29069 5' -59.9 NC_006146.1 + 20210 0.66 0.783835
Target:  5'- -aGGCc--AGGCCCUCCG-UCCUCCc -3'
miRNA:   3'- ccCCGuuaUUCGGGGGGCgAGGAGGa -5'
29069 5' -59.9 NC_006146.1 + 14054 0.66 0.783835
Target:  5'- -aGGCc--AGGCCCUCCG-UCCUCCc -3'
miRNA:   3'- ccCCGuuaUUCGGGGGGCgAGGAGGa -5'
29069 5' -59.9 NC_006146.1 + 51907 0.66 0.783835
Target:  5'- -cGGUGAcgcuuccuCCCCCCaGCUCCUCCUu -3'
miRNA:   3'- ccCCGUUauuc----GGGGGG-CGAGGAGGA- -5'
29069 5' -59.9 NC_006146.1 + 23288 0.66 0.783835
Target:  5'- -aGGCc--AGGCCCUCCG-UCCUCCc -3'
miRNA:   3'- ccCCGuuaUUCGGGGGGCgAGGAGGa -5'
29069 5' -59.9 NC_006146.1 + 4964 0.66 0.774833
Target:  5'- aGGGGCcacgaGAGCCUCCUgGCggCCUCaCUa -3'
miRNA:   3'- -CCCCGuua--UUCGGGGGG-CGa-GGAG-GA- -5'
29069 5' -59.9 NC_006146.1 + 44702 0.66 0.774833
Target:  5'- uGGcGGCGGUGGccguGgCCCCCGCUggCCggCCUg -3'
miRNA:   3'- -CC-CCGUUAUU----CgGGGGGCGA--GGa-GGA- -5'
29069 5' -59.9 NC_006146.1 + 58614 0.66 0.769373
Target:  5'- gGGGGCAucaacccAGCCCCCCacuacuggaaccaauGCcaCCUCUa -3'
miRNA:   3'- -CCCCGUuau----UCGGGGGG---------------CGa-GGAGGa -5'
29069 5' -59.9 NC_006146.1 + 70731 0.66 0.76571
Target:  5'- gGGGGCuuauuGCCCCCCucGCggacgCCgCCg -3'
miRNA:   3'- -CCCCGuuauuCGGGGGG--CGa----GGaGGa -5'
29069 5' -59.9 NC_006146.1 + 148259 0.66 0.76571
Target:  5'- cGGGGa----GGCaCCCUgaggUGCUCCUCCg -3'
miRNA:   3'- -CCCCguuauUCG-GGGG----GCGAGGAGGa -5'
29069 5' -59.9 NC_006146.1 + 151337 0.66 0.76571
Target:  5'- cGGGGa----GGCaCCCUgaggUGCUCCUCCg -3'
miRNA:   3'- -CCCCguuauUCG-GGGG----GCGAGGAGGa -5'
29069 5' -59.9 NC_006146.1 + 157493 0.66 0.76571
Target:  5'- cGGGGa----GGCaCCCUgaggUGCUCCUCCg -3'
miRNA:   3'- -CCCCguuauUCG-GGGG----GCGAGGAGGa -5'
29069 5' -59.9 NC_006146.1 + 45530 0.66 0.76571
Target:  5'- gGGGGCc-UGGGCCUCCUuggGCUuggccgcccuggCCUCCg -3'
miRNA:   3'- -CCCCGuuAUUCGGGGGG---CGA------------GGAGGa -5'
29069 5' -59.9 NC_006146.1 + 54653 0.66 0.76571
Target:  5'- cGGGCAuuggagGGGCCCCgUCGUagaCCUCCc -3'
miRNA:   3'- cCCCGUua----UUCGGGG-GGCGa--GGAGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.