miRNA display CGI


Results 1 - 20 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29069 5' -59.9 NC_006146.1 + 127402 0.66 0.783835
Target:  5'- uGGGGC--UGGGCCCCgCCGCcggagCCg -3'
miRNA:   3'- -CCCCGuuAUUCGGGG-GGCGagga-GGa -5'
29069 5' -59.9 NC_006146.1 + 125929 0.66 0.756475
Target:  5'- aGGGuccggccaccGCGGUcGAGUCCCCCGgggCCUCCc -3'
miRNA:   3'- -CCC----------CGUUA-UUCGGGGGGCga-GGAGGa -5'
29069 5' -59.9 NC_006146.1 + 156143 0.66 0.747137
Target:  5'- gGGGGCAGU-GGUCCCCCuC-CCUagaaCUg -3'
miRNA:   3'- -CCCCGUUAuUCGGGGGGcGaGGAg---GA- -5'
29069 5' -59.9 NC_006146.1 + 153065 0.66 0.747137
Target:  5'- gGGGGCAGU-GGUCCCCCuC-CCUagaaCUg -3'
miRNA:   3'- -CCCCGUUAuUCGGGGGGcGaGGAg---GA- -5'
29069 5' -59.9 NC_006146.1 + 149987 0.66 0.747137
Target:  5'- gGGGGCAGU-GGUCCCCCuC-CCUagaaCUg -3'
miRNA:   3'- -CCCCGUUAuUCGGGGGGcGaGGAg---GA- -5'
29069 5' -59.9 NC_006146.1 + 146909 0.66 0.747137
Target:  5'- gGGGGCAGU-GGUCCCCCuC-CCUagaaCUg -3'
miRNA:   3'- -CCCCGUUAuUCGGGGGGcGaGGAg---GA- -5'
29069 5' -59.9 NC_006146.1 + 143831 0.66 0.747137
Target:  5'- gGGGGCAGU-GGUCCCCCuC-CCUagaaCUg -3'
miRNA:   3'- -CCCCGUUAuUCGGGGGGcGaGGAg---GA- -5'
29069 5' -59.9 NC_006146.1 + 118982 0.66 0.737704
Target:  5'- cGGGGCcgcccgucGGUgccucgGAGgCCCCCGCcgacgcagCCUCCa -3'
miRNA:   3'- -CCCCG--------UUA------UUCgGGGGGCGa-------GGAGGa -5'
29069 5' -59.9 NC_006146.1 + 46296 0.66 0.736756
Target:  5'- uGGcGGCGGUcgagcucGAGCCCCUC-UUCCUCUc -3'
miRNA:   3'- -CC-CCGUUA-------UUCGGGGGGcGAGGAGGa -5'
29069 5' -59.9 NC_006146.1 + 117260 0.66 0.756475
Target:  5'- cGGGCGcugacUGAGCCCCgCGaUCCUgCCg -3'
miRNA:   3'- cCCCGUu----AUUCGGGGgGCgAGGA-GGa -5'
29069 5' -59.9 NC_006146.1 + 106336 0.66 0.76571
Target:  5'- aGGaGCu---GGCCCCCUGCUuCCUgCCc -3'
miRNA:   3'- cCC-CGuuauUCGGGGGGCGA-GGA-GGa -5'
29069 5' -59.9 NC_006146.1 + 70731 0.66 0.76571
Target:  5'- gGGGGCuuauuGCCCCCCucGCggacgCCgCCg -3'
miRNA:   3'- -CCCCGuuauuCGGGGGG--CGa----GGaGGa -5'
29069 5' -59.9 NC_006146.1 + 51907 0.66 0.783835
Target:  5'- -cGGUGAcgcuuccuCCCCCCaGCUCCUCCUu -3'
miRNA:   3'- ccCCGUUauuc----GGGGGG-CGAGGAGGA- -5'
29069 5' -59.9 NC_006146.1 + 58614 0.66 0.769373
Target:  5'- gGGGGCAucaacccAGCCCCCCacuacuggaaccaauGCcaCCUCUa -3'
miRNA:   3'- -CCCCGUuau----UCGGGGGG---------------CGa-GGAGGa -5'
29069 5' -59.9 NC_006146.1 + 157493 0.66 0.76571
Target:  5'- cGGGGa----GGCaCCCUgaggUGCUCCUCCg -3'
miRNA:   3'- -CCCCguuauUCG-GGGG----GCGAGGAGGa -5'
29069 5' -59.9 NC_006146.1 + 154415 0.66 0.76571
Target:  5'- cGGGGa----GGCaCCCUgaggUGCUCCUCCg -3'
miRNA:   3'- -CCCCguuauUCG-GGGG----GCGAGGAGGa -5'
29069 5' -59.9 NC_006146.1 + 151337 0.66 0.76571
Target:  5'- cGGGGa----GGCaCCCUgaggUGCUCCUCCg -3'
miRNA:   3'- -CCCCguuauUCG-GGGG----GCGAGGAGGa -5'
29069 5' -59.9 NC_006146.1 + 148259 0.66 0.76571
Target:  5'- cGGGGa----GGCaCCCUgaggUGCUCCUCCg -3'
miRNA:   3'- -CCCCguuauUCG-GGGG----GCGAGGAGGa -5'
29069 5' -59.9 NC_006146.1 + 145181 0.66 0.76571
Target:  5'- cGGGGa----GGCaCCCUgaggUGCUCCUCCg -3'
miRNA:   3'- -CCCCguuauUCG-GGGG----GCGAGGAGGa -5'
29069 5' -59.9 NC_006146.1 + 142103 0.66 0.76571
Target:  5'- cGGGGa----GGCaCCCUgaggUGCUCCUCCg -3'
miRNA:   3'- -CCCCguuauUCG-GGGG----GCGAGGAGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.