Results 1 - 20 of 202 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29069 | 5' | -59.9 | NC_006146.1 | + | 100180 | 1.09 | 0.001296 |
Target: 5'- gGGGGCAAUAAGCCCCCCGCUCCUCCUg -3' miRNA: 3'- -CCCCGUUAUUCGGGGGGCGAGGAGGA- -5' |
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29069 | 5' | -59.9 | NC_006146.1 | + | 54140 | 0.77 | 0.206572 |
Target: 5'- uGGaGUAGUAgcGGCCCCCCGUgcccUCCUCCUc -3' miRNA: 3'- cCC-CGUUAU--UCGGGGGGCG----AGGAGGA- -5' |
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29069 | 5' | -59.9 | NC_006146.1 | + | 412 | 0.77 | 0.206572 |
Target: 5'- gGGGGUccggggAAGCCCCCCGCUCgCcCCUc -3' miRNA: 3'- -CCCCGuua---UUCGGGGGGCGAG-GaGGA- -5' |
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29069 | 5' | -59.9 | NC_006146.1 | + | 128604 | 0.77 | 0.221912 |
Target: 5'- aGGGCAcUccGgCUCCCGCUCCUCCUc -3' miRNA: 3'- cCCCGUuAuuCgGGGGGCGAGGAGGA- -5' |
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29069 | 5' | -59.9 | NC_006146.1 | + | 2275 | 0.76 | 0.261487 |
Target: 5'- cGGGCcccggggAAGCCCCCCGCUCgCcCCUc -3' miRNA: 3'- cCCCGuua----UUCGGGGGGCGAG-GaGGA- -5' |
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29069 | 5' | -59.9 | NC_006146.1 | + | 3207 | 0.76 | 0.261487 |
Target: 5'- cGGGCcccggggAAGCCCCCCGCUCgCcCCUc -3' miRNA: 3'- cCCCGuua----UUCGGGGGGCGAG-GaGGA- -5' |
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29069 | 5' | -59.9 | NC_006146.1 | + | 1343 | 0.76 | 0.261487 |
Target: 5'- cGGGCcccggggAAGCCCCCCGCUCgCcCCUc -3' miRNA: 3'- cCCCGuua----UUCGGGGGGCGAG-GaGGA- -5' |
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29069 | 5' | -59.9 | NC_006146.1 | + | 155598 | 0.75 | 0.280135 |
Target: 5'- cGGGGCu---GGCCUCCgGCcCCUCCUc -3' miRNA: 3'- -CCCCGuuauUCGGGGGgCGaGGAGGA- -5' |
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29069 | 5' | -59.9 | NC_006146.1 | + | 115296 | 0.75 | 0.292483 |
Target: 5'- cGGGCGggaguggucauagAUAAGCCCCUCGgCggCCUCCUg -3' miRNA: 3'- cCCCGU-------------UAUUCGGGGGGC-Ga-GGAGGA- -5' |
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29069 | 5' | -59.9 | NC_006146.1 | + | 14574 | 0.75 | 0.293144 |
Target: 5'- cGGGGC-GUGAGCCCcaucccggaCCCGCgCCUCUa -3' miRNA: 3'- -CCCCGuUAUUCGGG---------GGGCGaGGAGGa -5' |
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29069 | 5' | -59.9 | NC_006146.1 | + | 40170 | 0.74 | 0.320567 |
Target: 5'- cGGGGaa--GAGCCCgCCGC-CCUCCUc -3' miRNA: 3'- -CCCCguuaUUCGGGgGGCGaGGAGGA- -5' |
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29069 | 5' | -59.9 | NC_006146.1 | + | 13132 | 0.74 | 0.327715 |
Target: 5'- uGGGGCAGcAGGCUcaacaCCCCGgaCCUCCc -3' miRNA: 3'- -CCCCGUUaUUCGG-----GGGGCgaGGAGGa -5' |
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29069 | 5' | -59.9 | NC_006146.1 | + | 103409 | 0.74 | 0.327715 |
Target: 5'- gGGGGCGucGUGcuCCCCUCGCUCCUggaCCg -3' miRNA: 3'- -CCCCGU--UAUucGGGGGGCGAGGA---GGa -5' |
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29069 | 5' | -59.9 | NC_006146.1 | + | 19288 | 0.74 | 0.327715 |
Target: 5'- uGGGGCAGcAGGCUcaacaCCCCGgaCCUCCc -3' miRNA: 3'- -CCCCGUUaUUCGG-----GGGGCgaGGAGGa -5' |
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29069 | 5' | -59.9 | NC_006146.1 | + | 22366 | 0.74 | 0.327715 |
Target: 5'- uGGGGCAGcAGGCUcaacaCCCCGgaCCUCCc -3' miRNA: 3'- -CCCCGUUaUUCGG-----GGGGCgaGGAGGa -5' |
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29069 | 5' | -59.9 | NC_006146.1 | + | 25444 | 0.74 | 0.327715 |
Target: 5'- uGGGGCAGcAGGCUcaacaCCCCGgaCCUCCc -3' miRNA: 3'- -CCCCGUUaUUCGG-----GGGGCgaGGAGGa -5' |
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29069 | 5' | -59.9 | NC_006146.1 | + | 28522 | 0.74 | 0.327715 |
Target: 5'- uGGGGCAGcAGGCUcaacaCCCCGgaCCUCCc -3' miRNA: 3'- -CCCCGUUaUUCGG-----GGGGCgaGGAGGa -5' |
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29069 | 5' | -59.9 | NC_006146.1 | + | 55711 | 0.74 | 0.327715 |
Target: 5'- gGGGGCucu--GCCCgCCGCUggCCUCCg -3' miRNA: 3'- -CCCCGuuauuCGGGgGGCGA--GGAGGa -5' |
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29069 | 5' | -59.9 | NC_006146.1 | + | 16210 | 0.74 | 0.327715 |
Target: 5'- uGGGGCAGcAGGCUcaacaCCCCGgaCCUCCc -3' miRNA: 3'- -CCCCGUUaUUCGG-----GGGGCgaGGAGGa -5' |
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29069 | 5' | -59.9 | NC_006146.1 | + | 8263 | 0.74 | 0.334982 |
Target: 5'- gGGGGCAu---GCaCCCCCGUUCuCUCUg -3' miRNA: 3'- -CCCCGUuauuCG-GGGGGCGAG-GAGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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