miRNA display CGI


Results 21 - 40 of 202 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29069 5' -59.9 NC_006146.1 + 151337 0.66 0.76571
Target:  5'- cGGGGa----GGCaCCCUgaggUGCUCCUCCg -3'
miRNA:   3'- -CCCCguuauUCG-GGGG----GCGAGGAGGa -5'
29069 5' -59.9 NC_006146.1 + 145181 0.66 0.76571
Target:  5'- cGGGGa----GGCaCCCUgaggUGCUCCUCCg -3'
miRNA:   3'- -CCCCguuauUCG-GGGG----GCGAGGAGGa -5'
29069 5' -59.9 NC_006146.1 + 148259 0.66 0.76571
Target:  5'- cGGGGa----GGCaCCCUgaggUGCUCCUCCg -3'
miRNA:   3'- -CCCCguuauUCG-GGGG----GCGAGGAGGa -5'
29069 5' -59.9 NC_006146.1 + 106336 0.66 0.76571
Target:  5'- aGGaGCu---GGCCCCCUGCUuCCUgCCc -3'
miRNA:   3'- cCC-CGuuauUCGGGGGGCGA-GGA-GGa -5'
29069 5' -59.9 NC_006146.1 + 117260 0.66 0.756475
Target:  5'- cGGGCGcugacUGAGCCCCgCGaUCCUgCCg -3'
miRNA:   3'- cCCCGUu----AUUCGGGGgGCgAGGA-GGa -5'
29069 5' -59.9 NC_006146.1 + 125929 0.66 0.756475
Target:  5'- aGGGuccggccaccGCGGUcGAGUCCCCCGgggCCUCCc -3'
miRNA:   3'- -CCC----------CGUUA-UUCGGGGGGCga-GGAGGa -5'
29069 5' -59.9 NC_006146.1 + 155178 0.66 0.756475
Target:  5'- uGGGCGGaggaaacAGCCCCCU-CUCCUCg- -3'
miRNA:   3'- cCCCGUUau-----UCGGGGGGcGAGGAGga -5'
29069 5' -59.9 NC_006146.1 + 53711 0.66 0.756475
Target:  5'- gGGGGCAc---GUUCCCCG-UCCUCUc -3'
miRNA:   3'- -CCCCGUuauuCGGGGGGCgAGGAGGa -5'
29069 5' -59.9 NC_006146.1 + 153923 0.66 0.753684
Target:  5'- aGGGUguaGGUAcccuuguccaggaaGGCCCgCCGCUCC-CCg -3'
miRNA:   3'- cCCCG---UUAU--------------UCGGGgGGCGAGGaGGa -5'
29069 5' -59.9 NC_006146.1 + 33847 0.66 0.747137
Target:  5'- aGGGGUguGGUccccggaaccccAGGCCCCCacccgGcCUCCUCCc -3'
miRNA:   3'- -CCCCG--UUA------------UUCGGGGGg----C-GAGGAGGa -5'
29069 5' -59.9 NC_006146.1 + 33490 0.66 0.747137
Target:  5'- aGGGGCGu--GGUCCCCgGgaCC-CCa -3'
miRNA:   3'- -CCCCGUuauUCGGGGGgCgaGGaGGa -5'
29069 5' -59.9 NC_006146.1 + 156143 0.66 0.747137
Target:  5'- gGGGGCAGU-GGUCCCCCuC-CCUagaaCUg -3'
miRNA:   3'- -CCCCGUUAuUCGGGGGGcGaGGAg---GA- -5'
29069 5' -59.9 NC_006146.1 + 146909 0.66 0.747137
Target:  5'- gGGGGCAGU-GGUCCCCCuC-CCUagaaCUg -3'
miRNA:   3'- -CCCCGUUAuUCGGGGGGcGaGGAg---GA- -5'
29069 5' -59.9 NC_006146.1 + 33660 0.66 0.747137
Target:  5'- aGGGGUguGGUccccgggaccccAGGCCCCCacccgGCUuCCUCCc -3'
miRNA:   3'- -CCCCG--UUA------------UUCGGGGGg----CGA-GGAGGa -5'
29069 5' -59.9 NC_006146.1 + 149987 0.66 0.747137
Target:  5'- gGGGGCAGU-GGUCCCCCuC-CCUagaaCUg -3'
miRNA:   3'- -CCCCGUUAuUCGGGGGGcGaGGAg---GA- -5'
29069 5' -59.9 NC_006146.1 + 44215 0.66 0.747137
Target:  5'- gGGGGCGGU--GCCUuggugaCCGuCUCCUCUg -3'
miRNA:   3'- -CCCCGUUAuuCGGGg-----GGC-GAGGAGGa -5'
29069 5' -59.9 NC_006146.1 + 143831 0.66 0.747137
Target:  5'- gGGGGCAGU-GGUCCCCCuC-CCUagaaCUg -3'
miRNA:   3'- -CCCCGUUAuUCGGGGGGcGaGGAg---GA- -5'
29069 5' -59.9 NC_006146.1 + 153065 0.66 0.747137
Target:  5'- gGGGGCAGU-GGUCCCCCuC-CCUagaaCUg -3'
miRNA:   3'- -CCCCGUUAuUCGGGGGGcGaGGAg---GA- -5'
29069 5' -59.9 NC_006146.1 + 85930 0.66 0.746198
Target:  5'- uGGGGCcugGAUGGccugcgggacuuuGCCCCCCccaaGCgaggcgCCUCCg -3'
miRNA:   3'- -CCCCG---UUAUU-------------CGGGGGG----CGa-----GGAGGa -5'
29069 5' -59.9 NC_006146.1 + 53893 0.66 0.741488
Target:  5'- aGGGCGu--AGCCCagguccagggCCCGCUCCacgcgcucguugagcUCCUc -3'
miRNA:   3'- cCCCGUuauUCGGG----------GGGCGAGG---------------AGGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.