miRNA display CGI


Results 1 - 20 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29069 5' -59.9 NC_006146.1 + 412 0.77 0.206572
Target:  5'- gGGGGUccggggAAGCCCCCCGCUCgCcCCUc -3'
miRNA:   3'- -CCCCGuua---UUCGGGGGGCGAG-GaGGA- -5'
29069 5' -59.9 NC_006146.1 + 1343 0.76 0.261487
Target:  5'- cGGGCcccggggAAGCCCCCCGCUCgCcCCUc -3'
miRNA:   3'- cCCCGuua----UUCGGGGGGCGAG-GaGGA- -5'
29069 5' -59.9 NC_006146.1 + 2275 0.76 0.261487
Target:  5'- cGGGCcccggggAAGCCCCCCGCUCgCcCCUc -3'
miRNA:   3'- cCCCGuua----UUCGGGGGGCGAG-GaGGA- -5'
29069 5' -59.9 NC_006146.1 + 3207 0.76 0.261487
Target:  5'- cGGGCcccggggAAGCCCCCCGCUCgCcCCUc -3'
miRNA:   3'- cCCCGuua----UUCGGGGGGCGAG-GaGGA- -5'
29069 5' -59.9 NC_006146.1 + 4964 0.66 0.774833
Target:  5'- aGGGGCcacgaGAGCCUCCUgGCggCCUCaCUa -3'
miRNA:   3'- -CCCCGuua--UUCGGGGGG-CGa-GGAG-GA- -5'
29069 5' -59.9 NC_006146.1 + 8263 0.74 0.334982
Target:  5'- gGGGGCAu---GCaCCCCCGUUCuCUCUg -3'
miRNA:   3'- -CCCCGUuauuCG-GGGGGCGAG-GAGGa -5'
29069 5' -59.9 NC_006146.1 + 12354 0.73 0.34911
Target:  5'- uGGGCcucAGGCCCUCCGCguccccgUCCUCCa -3'
miRNA:   3'- cCCCGuuaUUCGGGGGGCG-------AGGAGGa -5'
29069 5' -59.9 NC_006146.1 + 13132 0.74 0.327715
Target:  5'- uGGGGCAGcAGGCUcaacaCCCCGgaCCUCCc -3'
miRNA:   3'- -CCCCGUUaUUCGG-----GGGGCgaGGAGGa -5'
29069 5' -59.9 NC_006146.1 + 13917 0.67 0.69919
Target:  5'- aGGGCGccc-GCCUCCCcCUCCUCUc -3'
miRNA:   3'- cCCCGUuauuCGGGGGGcGAGGAGGa -5'
29069 5' -59.9 NC_006146.1 + 14054 0.66 0.783835
Target:  5'- -aGGCc--AGGCCCUCCG-UCCUCCc -3'
miRNA:   3'- ccCCGuuaUUCGGGGGGCgAGGAGGa -5'
29069 5' -59.9 NC_006146.1 + 14365 0.71 0.494085
Target:  5'- uGGGGUcgggucccggGAUcucGCCUCCCGCUCC-CCUc -3'
miRNA:   3'- -CCCCG----------UUAuu-CGGGGGGCGAGGaGGA- -5'
29069 5' -59.9 NC_006146.1 + 14574 0.75 0.293144
Target:  5'- cGGGGC-GUGAGCCCcaucccggaCCCGCgCCUCUa -3'
miRNA:   3'- -CCCCGuUAUUCGGG---------GGGCGaGGAGGa -5'
29069 5' -59.9 NC_006146.1 + 15433 0.73 0.34911
Target:  5'- uGGGCcucAGGCCCUCCGCguccccgUCCUCCa -3'
miRNA:   3'- cCCCGuuaUUCGGGGGGCG-------AGGAGGa -5'
29069 5' -59.9 NC_006146.1 + 16016 0.7 0.503432
Target:  5'- cGGGCGAggcccuGCCCCCCgacggGCUCUaCCUg -3'
miRNA:   3'- cCCCGUUauu---CGGGGGG-----CGAGGaGGA- -5'
29069 5' -59.9 NC_006146.1 + 16210 0.74 0.327715
Target:  5'- uGGGGCAGcAGGCUcaacaCCCCGgaCCUCCc -3'
miRNA:   3'- -CCCCGUUaUUCGG-----GGGGCgaGGAGGa -5'
29069 5' -59.9 NC_006146.1 + 16994 0.67 0.69919
Target:  5'- aGGGCGccc-GCCUCCCcCUCCUCUc -3'
miRNA:   3'- cCCCGUuauuCGGGGGGcGAGGAGGa -5'
29069 5' -59.9 NC_006146.1 + 17132 0.66 0.783835
Target:  5'- -aGGCc--AGGCCCUCCG-UCCUCCc -3'
miRNA:   3'- ccCCGuuaUUCGGGGGGCgAGGAGGa -5'
29069 5' -59.9 NC_006146.1 + 18511 0.73 0.34911
Target:  5'- uGGGCcucAGGCCCUCCGCguccccgUCCUCCa -3'
miRNA:   3'- cCCCGuuaUUCGGGGGGCG-------AGGAGGa -5'
29069 5' -59.9 NC_006146.1 + 18882 0.68 0.659825
Target:  5'- gGGGGCcuc-AGCCCCCacuguGCUUCUaCCg -3'
miRNA:   3'- -CCCCGuuauUCGGGGGg----CGAGGA-GGa -5'
29069 5' -59.9 NC_006146.1 + 19288 0.74 0.327715
Target:  5'- uGGGGCAGcAGGCUcaacaCCCCGgaCCUCCc -3'
miRNA:   3'- -CCCCGUUaUUCGG-----GGGGCgaGGAGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.