miRNA display CGI


Results 1 - 20 of 202 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29069 5' -59.9 NC_006146.1 + 100180 1.09 0.001296
Target:  5'- gGGGGCAAUAAGCCCCCCGCUCCUCCUg -3'
miRNA:   3'- -CCCCGUUAUUCGGGGGGCGAGGAGGA- -5'
29069 5' -59.9 NC_006146.1 + 27745 0.73 0.34911
Target:  5'- uGGGCcucAGGCCCUCCGCguccccgUCCUCCa -3'
miRNA:   3'- cCCCGuuaUUCGGGGGGCG-------AGGAGGa -5'
29069 5' -59.9 NC_006146.1 + 153446 0.73 0.38102
Target:  5'- aGGGGcCGGUGuuguguuguuGCCCUCCGCcugCCUCCg -3'
miRNA:   3'- -CCCC-GUUAUu---------CGGGGGGCGa--GGAGGa -5'
29069 5' -59.9 NC_006146.1 + 33348 0.66 0.786511
Target:  5'- cGGGGCAgccggguggccgccgGUGGGUCcgccgggccgcugCCCCGCUCCg--- -3'
miRNA:   3'- -CCCCGU---------------UAUUCGG-------------GGGGCGAGGagga -5'
29069 5' -59.9 NC_006146.1 + 13132 0.74 0.327715
Target:  5'- uGGGGCAGcAGGCUcaacaCCCCGgaCCUCCc -3'
miRNA:   3'- -CCCCGUUaUUCGG-----GGGGCgaGGAGGa -5'
29069 5' -59.9 NC_006146.1 + 16210 0.74 0.327715
Target:  5'- uGGGGCAGcAGGCUcaacaCCCCGgaCCUCCc -3'
miRNA:   3'- -CCCCGUUaUUCGG-----GGGGCgaGGAGGa -5'
29069 5' -59.9 NC_006146.1 + 22366 0.74 0.327715
Target:  5'- uGGGGCAGcAGGCUcaacaCCCCGgaCCUCCc -3'
miRNA:   3'- -CCCCGUUaUUCGG-----GGGGCgaGGAGGa -5'
29069 5' -59.9 NC_006146.1 + 25444 0.74 0.327715
Target:  5'- uGGGGCAGcAGGCUcaacaCCCCGgaCCUCCc -3'
miRNA:   3'- -CCCCGUUaUUCGG-----GGGGCgaGGAGGa -5'
29069 5' -59.9 NC_006146.1 + 8263 0.74 0.334982
Target:  5'- gGGGGCAu---GCaCCCCCGUUCuCUCUg -3'
miRNA:   3'- -CCCCGUuauuCG-GGGGGCGAG-GAGGa -5'
29069 5' -59.9 NC_006146.1 + 24667 0.73 0.34911
Target:  5'- uGGGCcucAGGCCCUCCGCguccccgUCCUCCa -3'
miRNA:   3'- cCCCGuuaUUCGGGGGGCG-------AGGAGGa -5'
29069 5' -59.9 NC_006146.1 + 15433 0.73 0.34911
Target:  5'- uGGGCcucAGGCCCUCCGCguccccgUCCUCCa -3'
miRNA:   3'- cCCCGuuaUUCGGGGGGCG-------AGGAGGa -5'
29069 5' -59.9 NC_006146.1 + 55711 0.74 0.327715
Target:  5'- gGGGGCucu--GCCCgCCGCUggCCUCCg -3'
miRNA:   3'- -CCCCGuuauuCGGGgGGCGA--GGAGGa -5'
29069 5' -59.9 NC_006146.1 + 54140 0.77 0.206572
Target:  5'- uGGaGUAGUAgcGGCCCCCCGUgcccUCCUCCUc -3'
miRNA:   3'- cCC-CGUUAU--UCGGGGGGCG----AGGAGGA- -5'
29069 5' -59.9 NC_006146.1 + 18511 0.73 0.34911
Target:  5'- uGGGCcucAGGCCCUCCGCguccccgUCCUCCa -3'
miRNA:   3'- cCCCGuuaUUCGGGGGGCG-------AGGAGGa -5'
29069 5' -59.9 NC_006146.1 + 155598 0.75 0.280135
Target:  5'- cGGGGCu---GGCCUCCgGCcCCUCCUc -3'
miRNA:   3'- -CCCCGuuauUCGGGGGgCGaGGAGGA- -5'
29069 5' -59.9 NC_006146.1 + 28522 0.74 0.327715
Target:  5'- uGGGGCAGcAGGCUcaacaCCCCGgaCCUCCc -3'
miRNA:   3'- -CCCCGUUaUUCGG-----GGGGCgaGGAGGa -5'
29069 5' -59.9 NC_006146.1 + 21589 0.73 0.34911
Target:  5'- uGGGCcucAGGCCCUCCGCguccccgUCCUCCa -3'
miRNA:   3'- cCCCGuuaUUCGGGGGGCG-------AGGAGGa -5'
29069 5' -59.9 NC_006146.1 + 69642 0.73 0.37306
Target:  5'- gGGGGCGgcuaAUGGGCCCgCgGUccUCCUCCa -3'
miRNA:   3'- -CCCCGU----UAUUCGGGgGgCG--AGGAGGa -5'
29069 5' -59.9 NC_006146.1 + 115296 0.75 0.292483
Target:  5'- cGGGCGggaguggucauagAUAAGCCCCUCGgCggCCUCCUg -3'
miRNA:   3'- cCCCGU-------------UAUUCGGGGGGC-Ga-GGAGGA- -5'
29069 5' -59.9 NC_006146.1 + 19288 0.74 0.327715
Target:  5'- uGGGGCAGcAGGCUcaacaCCCCGgaCCUCCc -3'
miRNA:   3'- -CCCCGUUaUUCGG-----GGGGCgaGGAGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.