miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2907 3' -59.8 NC_001493.1 + 2975 0.73 0.34522
Target:  5'- gAGUCCGa-GGUCcGCACCGACCCGc -3'
miRNA:   3'- gUCGGGUggCCAGaCGUGGUUGGGCu -5'
2907 3' -59.8 NC_001493.1 + 4567 0.68 0.588232
Target:  5'- -cGCCC-CCGGg-UGUGCCcaAACCCGAa -3'
miRNA:   3'- guCGGGuGGCCagACGUGG--UUGGGCU- -5'
2907 3' -59.8 NC_001493.1 + 5323 0.73 0.315798
Target:  5'- aAGUCCACCGG-CUGCACgcuCGGCCCc- -3'
miRNA:   3'- gUCGGGUGGCCaGACGUG---GUUGGGcu -5'
2907 3' -59.8 NC_001493.1 + 10571 0.66 0.688686
Target:  5'- -uGCCCACaCGGUCUGau----CCCGAa -3'
miRNA:   3'- guCGGGUG-GCCAGACgugguuGGGCU- -5'
2907 3' -59.8 NC_001493.1 + 19888 0.72 0.392931
Target:  5'- cCAGUCCcCCGucgggaGUC-GCGCCGGCCCGAa -3'
miRNA:   3'- -GUCGGGuGGC------CAGaCGUGGUUGGGCU- -5'
2907 3' -59.8 NC_001493.1 + 21202 0.67 0.648599
Target:  5'- cCAGUCCcggAUCGGUUagUGCACaagGCCCGAc -3'
miRNA:   3'- -GUCGGG---UGGCCAG--ACGUGgu-UGGGCU- -5'
2907 3' -59.8 NC_001493.1 + 22796 0.69 0.548507
Target:  5'- gAGCCCGacUCGGUCUaCACgguaGACCCGGg -3'
miRNA:   3'- gUCGGGU--GGCCAGAcGUGg---UUGGGCU- -5'
2907 3' -59.8 NC_001493.1 + 26310 0.66 0.70849
Target:  5'- aGGCUCACCGGUgguucucggcaCcGCGCCGuCCCa- -3'
miRNA:   3'- gUCGGGUGGCCA-----------GaCGUGGUuGGGcu -5'
2907 3' -59.8 NC_001493.1 + 32745 0.72 0.368546
Target:  5'- -cGCCCGucCCGGUCgcgaccGguCCGGCCCGAg -3'
miRNA:   3'- guCGGGU--GGCCAGa-----CguGGUUGGGCU- -5'
2907 3' -59.8 NC_001493.1 + 35471 1.08 0.001306
Target:  5'- uCAGCCCACCGGUCUGCACCAACCCGAg -3'
miRNA:   3'- -GUCGGGUGGCCAGACGUGGUUGGGCU- -5'
2907 3' -59.8 NC_001493.1 + 45959 0.66 0.728043
Target:  5'- aGGUCCAgugCGGUCUGCAUgGACuCCa- -3'
miRNA:   3'- gUCGGGUg--GCCAGACGUGgUUG-GGcu -5'
2907 3' -59.8 NC_001493.1 + 46214 0.66 0.718302
Target:  5'- gGGCuCCGCgCGuUCaaUGCGCCGguGCCCGAg -3'
miRNA:   3'- gUCG-GGUG-GCcAG--ACGUGGU--UGGGCU- -5'
2907 3' -59.8 NC_001493.1 + 47914 0.66 0.71928
Target:  5'- uCGGaCCCGCgGGUCUGgAUCGucugggguuguacauCCCGAa -3'
miRNA:   3'- -GUC-GGGUGgCCAGACgUGGUu--------------GGGCU- -5'
2907 3' -59.8 NC_001493.1 + 48258 0.68 0.578239
Target:  5'- aGGCCCuCCacgCgGUACCGACCCGAu -3'
miRNA:   3'- gUCGGGuGGccaGaCGUGGUUGGGCU- -5'
2907 3' -59.8 NC_001493.1 + 49457 0.69 0.50966
Target:  5'- uGGCauggAUCGGUCUcGCACCGACCCu- -3'
miRNA:   3'- gUCGgg--UGGCCAGA-CGUGGUUGGGcu -5'
2907 3' -59.8 NC_001493.1 + 50225 0.69 0.548507
Target:  5'- --aCCCuuACCGGUCUGCgaagggGCCAACUCGu -3'
miRNA:   3'- gucGGG--UGGCCAGACG------UGGUUGGGCu -5'
2907 3' -59.8 NC_001493.1 + 57340 0.67 0.627439
Target:  5'- --cCUCACCGGg-UGCACCGcggugaaGCCCGAg -3'
miRNA:   3'- gucGGGUGGCCagACGUGGU-------UGGGCU- -5'
2907 3' -59.8 NC_001493.1 + 62470 0.66 0.688686
Target:  5'- aUAGCCC-CCG---UGgACCGACCCGGu -3'
miRNA:   3'- -GUCGGGuGGCcagACgUGGUUGGGCU- -5'
2907 3' -59.8 NC_001493.1 + 62881 0.66 0.70849
Target:  5'- aAGCCCACgGGg--GCgACCGGCaCCGu -3'
miRNA:   3'- gUCGGGUGgCCagaCG-UGGUUG-GGCu -5'
2907 3' -59.8 NC_001493.1 + 62965 0.66 0.70849
Target:  5'- aAGCCCACgGGg--GCgACCGGCaCCGu -3'
miRNA:   3'- gUCGGGUGgCCagaCG-UGGUUG-GGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.