miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2907 3' -59.8 NC_001493.1 + 21202 0.67 0.648599
Target:  5'- cCAGUCCcggAUCGGUUagUGCACaagGCCCGAc -3'
miRNA:   3'- -GUCGGG---UGGCCAG--ACGUGgu-UGGGCU- -5'
2907 3' -59.8 NC_001493.1 + 57340 0.67 0.627439
Target:  5'- --cCUCACCGGg-UGCACCGcggugaaGCCCGAg -3'
miRNA:   3'- gucGGGUGGCCagACGUGGU-------UGGGCU- -5'
2907 3' -59.8 NC_001493.1 + 120121 0.68 0.588232
Target:  5'- -cGCCC-CCGGg-UGUGCCcaAACCCGAa -3'
miRNA:   3'- guCGGGuGGCCagACGUGG--UUGGGCU- -5'
2907 3' -59.8 NC_001493.1 + 4567 0.68 0.588232
Target:  5'- -cGCCC-CCGGg-UGUGCCcaAACCCGAa -3'
miRNA:   3'- guCGGGuGGCCagACGUGG--UUGGGCU- -5'
2907 3' -59.8 NC_001493.1 + 97077 0.68 0.588232
Target:  5'- aGGCuCCACCucggGGUCUGC-CCGGCCg-- -3'
miRNA:   3'- gUCG-GGUGG----CCAGACGuGGUUGGgcu -5'
2907 3' -59.8 NC_001493.1 + 48258 0.68 0.578239
Target:  5'- aGGCCCuCCacgCgGUACCGACCCGAu -3'
miRNA:   3'- gUCGGGuGGccaGaCGUGGUUGGGCU- -5'
2907 3' -59.8 NC_001493.1 + 66576 0.68 0.568283
Target:  5'- aAGCCCGCUGGgUUGauCACCAGCCUc- -3'
miRNA:   3'- gUCGGGUGGCCaGAC--GUGGUUGGGcu -5'
2907 3' -59.8 NC_001493.1 + 50225 0.69 0.548507
Target:  5'- --aCCCuuACCGGUCUGCgaagggGCCAACUCGu -3'
miRNA:   3'- gucGGG--UGGCCAGACG------UGGUUGGGCu -5'
2907 3' -59.8 NC_001493.1 + 22796 0.69 0.548507
Target:  5'- gAGCCCGacUCGGUCUaCACgguaGACCCGGg -3'
miRNA:   3'- gUCGGGU--GGCCAGAcGUGg---UUGGGCU- -5'
2907 3' -59.8 NC_001493.1 + 88357 0.69 0.5387
Target:  5'- cCGGUCCACCGGUgauuCGCCAGCCgGu -3'
miRNA:   3'- -GUCGGGUGGCCAgac-GUGGUUGGgCu -5'
2907 3' -59.8 NC_001493.1 + 110881 0.69 0.519271
Target:  5'- cCGGUCCcgGCgGGUUUcaGCACCAGCCaCGAa -3'
miRNA:   3'- -GUCGGG--UGgCCAGA--CGUGGUUGG-GCU- -5'
2907 3' -59.8 NC_001493.1 + 49457 0.69 0.50966
Target:  5'- uGGCauggAUCGGUCUcGCACCGACCCu- -3'
miRNA:   3'- gUCGgg--UGGCCAGA-CGUGGUUGGGcu -5'
2907 3' -59.8 NC_001493.1 + 88494 0.7 0.472013
Target:  5'- gGGCCCACguaCGGUgggUUGaCACaCGACCCGAa -3'
miRNA:   3'- gUCGGGUG---GCCA---GAC-GUG-GUUGGGCU- -5'
2907 3' -59.8 NC_001493.1 + 19888 0.72 0.392931
Target:  5'- cCAGUCCcCCGucgggaGUC-GCGCCGGCCCGAa -3'
miRNA:   3'- -GUCGGGuGGC------CAGaCGUGGUUGGGCU- -5'
2907 3' -59.8 NC_001493.1 + 95164 0.72 0.379796
Target:  5'- gAGCCCaagaggguugucaucACgGGUCUGC-CCAGCUCGGc -3'
miRNA:   3'- gUCGGG---------------UGgCCAGACGuGGUUGGGCU- -5'
2907 3' -59.8 NC_001493.1 + 32745 0.72 0.368546
Target:  5'- -cGCCCGucCCGGUCgcgaccGguCCGGCCCGAg -3'
miRNA:   3'- guCGGGU--GGCCAGa-----CguGGUUGGGCU- -5'
2907 3' -59.8 NC_001493.1 + 2975 0.73 0.34522
Target:  5'- gAGUCCGa-GGUCcGCACCGACCCGc -3'
miRNA:   3'- gUCGGGUggCCAGaCGUGGUUGGGCu -5'
2907 3' -59.8 NC_001493.1 + 120877 0.73 0.315798
Target:  5'- aAGUCCACCGG-CUGCACgcuCGGCCCc- -3'
miRNA:   3'- gUCGGGUGGCCaGACGUG---GUUGGGcu -5'
2907 3' -59.8 NC_001493.1 + 5323 0.73 0.315798
Target:  5'- aAGUCCACCGG-CUGCACgcuCGGCCCc- -3'
miRNA:   3'- gUCGGGUGGCCaGACGUG---GUUGGGcu -5'
2907 3' -59.8 NC_001493.1 + 93483 0.76 0.227871
Target:  5'- gAGCgCACCGGUCcGCGCgGucACCCGAa -3'
miRNA:   3'- gUCGgGUGGCCAGaCGUGgU--UGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.