Results 21 - 40 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2907 | 5' | -54.5 | NC_001493.1 | + | 9722 | 0.67 | 0.890568 |
Target: 5'- --cGGcGaGCAccGCGugGUagGCCGUGAGCCc -3' miRNA: 3'- cgaCC-C-CGU--CGCugUA--UGGCACUUGG- -5' |
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2907 | 5' | -54.5 | NC_001493.1 | + | 125276 | 0.67 | 0.890568 |
Target: 5'- --cGGcGaGCAccGCGugGUagGCCGUGAGCCc -3' miRNA: 3'- cgaCC-C-CGU--CGCugUA--UGGCACUUGG- -5' |
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2907 | 5' | -54.5 | NC_001493.1 | + | 93780 | 0.67 | 0.890568 |
Target: 5'- uGC-GGGGCGuacuaCGACGagGCCGUGA-CCa -3' miRNA: 3'- -CGaCCCCGUc----GCUGUa-UGGCACUuGG- -5' |
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2907 | 5' | -54.5 | NC_001493.1 | + | 130548 | 0.68 | 0.88363 |
Target: 5'- aGCUcGGGGguGCGAUcgagGCCGcGggUg -3' miRNA: 3'- -CGA-CCCCguCGCUGua--UGGCaCuuGg -5' |
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2907 | 5' | -54.5 | NC_001493.1 | + | 14993 | 0.68 | 0.88363 |
Target: 5'- aGCUcGGGGguGCGAUcgagGCCGcGggUg -3' miRNA: 3'- -CGA-CCCCguCGCUGua--UGGCaCuuGg -5' |
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2907 | 5' | -54.5 | NC_001493.1 | + | 92968 | 0.68 | 0.876464 |
Target: 5'- gGgUGGGGCgAGCu-CG-ACCGUGAGCg -3' miRNA: 3'- -CgACCCCG-UCGcuGUaUGGCACUUGg -5' |
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2907 | 5' | -54.5 | NC_001493.1 | + | 24297 | 0.68 | 0.876464 |
Target: 5'- gGCUGGGaauuuagAGCGAUucuCCGUGAACg -3' miRNA: 3'- -CGACCCcg-----UCGCUGuauGGCACUUGg -5' |
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2907 | 5' | -54.5 | NC_001493.1 | + | 42070 | 0.68 | 0.869073 |
Target: 5'- --aGGGGCGGCcccggGACGUGCCcccuGUGucuCCg -3' miRNA: 3'- cgaCCCCGUCG-----CUGUAUGG----CACuu-GG- -5' |
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2907 | 5' | -54.5 | NC_001493.1 | + | 21387 | 0.68 | 0.869073 |
Target: 5'- --aGGGGCGGCGGCcUGaaGgucGGGCCu -3' miRNA: 3'- cgaCCCCGUCGCUGuAUggCa--CUUGG- -5' |
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2907 | 5' | -54.5 | NC_001493.1 | + | 72814 | 0.68 | 0.861464 |
Target: 5'- -aUGGcGUGGCGACG-ACCGUGAucuACCc -3' miRNA: 3'- cgACCcCGUCGCUGUaUGGCACU---UGG- -5' |
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2907 | 5' | -54.5 | NC_001493.1 | + | 63042 | 0.69 | 0.83739 |
Target: 5'- ---cGGG-AGCGACcgGUACCGUGAccACCa -3' miRNA: 3'- cgacCCCgUCGCUG--UAUGGCACU--UGG- -5' |
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2907 | 5' | -54.5 | NC_001493.1 | + | 112541 | 0.69 | 0.828973 |
Target: 5'- ---cGGGUGuCGACAuucuUACCGUGAACCu -3' miRNA: 3'- cgacCCCGUcGCUGU----AUGGCACUUGG- -5' |
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2907 | 5' | -54.5 | NC_001493.1 | + | 94975 | 0.69 | 0.820372 |
Target: 5'- cGCccgGGGaucuacgaGCGGCGGCAgauuCCGUGGGCg -3' miRNA: 3'- -CGa--CCC--------CGUCGCUGUau--GGCACUUGg -5' |
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2907 | 5' | -54.5 | NC_001493.1 | + | 89243 | 0.7 | 0.781496 |
Target: 5'- --aGGGGguGCGACcgagaugggagcccgAgCGUGGACCa -3' miRNA: 3'- cgaCCCCguCGCUGua-------------UgGCACUUGG- -5' |
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2907 | 5' | -54.5 | NC_001493.1 | + | 45186 | 0.7 | 0.774908 |
Target: 5'- cGCcGGGuGCuGCGcGCAUAUCGaggUGAGCCg -3' miRNA: 3'- -CGaCCC-CGuCGC-UGUAUGGC---ACUUGG- -5' |
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2907 | 5' | -54.5 | NC_001493.1 | + | 108875 | 0.7 | 0.765385 |
Target: 5'- cGCUGGGGUGuGCGACcaucGCCugcgaUGGACCc -3' miRNA: 3'- -CGACCCCGU-CGCUGua--UGGc----ACUUGG- -5' |
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2907 | 5' | -54.5 | NC_001493.1 | + | 124698 | 0.71 | 0.745986 |
Target: 5'- cGCUcccGGGGaUGGCGGCGaggggggagGCCGUGAugCg -3' miRNA: 3'- -CGA---CCCC-GUCGCUGUa--------UGGCACUugG- -5' |
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2907 | 5' | -54.5 | NC_001493.1 | + | 9143 | 0.71 | 0.745986 |
Target: 5'- cGCUcccGGGGaUGGCGGCGaggggggagGCCGUGAugCg -3' miRNA: 3'- -CGA---CCCC-GUCGCUGUa--------UGGCACUugG- -5' |
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2907 | 5' | -54.5 | NC_001493.1 | + | 36196 | 0.71 | 0.745986 |
Target: 5'- gGCUGuGGCAGCGAggguUGUACCG-GGGCg -3' miRNA: 3'- -CGACcCCGUCGCU----GUAUGGCaCUUGg -5' |
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2907 | 5' | -54.5 | NC_001493.1 | + | 55048 | 0.71 | 0.726177 |
Target: 5'- -aUGGuGGCGGCGggGCGcugACCGUGGGCg -3' miRNA: 3'- cgACC-CCGUCGC--UGUa--UGGCACUUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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