miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29070 3' -56.1 NC_006146.1 + 105689 0.66 0.92376
Target:  5'- cUCuGGACGcccggGCUCCcagggCCCCCAGaGCGc -3'
miRNA:   3'- -AGuCCUGU-----UGAGGua---GGGGGUCcUGU- -5'
29070 3' -56.1 NC_006146.1 + 76249 0.66 0.92376
Target:  5'- ---cGACcGCUUCGUggUCCCCAGGGCGg -3'
miRNA:   3'- agucCUGuUGAGGUA--GGGGGUCCUGU- -5'
29070 3' -56.1 NC_006146.1 + 47304 0.66 0.92376
Target:  5'- cCGGGACucCUCCcgggCCUCCuGGAUg -3'
miRNA:   3'- aGUCCUGuuGAGGua--GGGGGuCCUGu -5'
29070 3' -56.1 NC_006146.1 + 46357 0.66 0.92376
Target:  5'- -gAGGACcGCgUCCGacagcagcUCCCCCAGGcCc -3'
miRNA:   3'- agUCCUGuUG-AGGU--------AGGGGGUCCuGu -5'
29070 3' -56.1 NC_006146.1 + 33207 0.66 0.92376
Target:  5'- cCGGGu--GCUCCugGUgCUCCGGGGCAg -3'
miRNA:   3'- aGUCCuguUGAGG--UAgGGGGUCCUGU- -5'
29070 3' -56.1 NC_006146.1 + 130476 0.66 0.92376
Target:  5'- aCGGGGCcGCUgCCG--CCCCGGGugGc -3'
miRNA:   3'- aGUCCUGuUGA-GGUagGGGGUCCugU- -5'
29070 3' -56.1 NC_006146.1 + 22833 0.66 0.918211
Target:  5'- cCAGGGCc-CUCCAgUCCagaCCCAGaGACGc -3'
miRNA:   3'- aGUCCUGuuGAGGU-AGG---GGGUC-CUGU- -5'
29070 3' -56.1 NC_006146.1 + 25911 0.66 0.918211
Target:  5'- cCAGGGCc-CUCCAgUCCagaCCCAGaGACGc -3'
miRNA:   3'- aGUCCUGuuGAGGU-AGG---GGGUC-CUGU- -5'
29070 3' -56.1 NC_006146.1 + 28988 0.66 0.918211
Target:  5'- cCAGGGCc-CUCCAgUCCagaCCCAGaGACGc -3'
miRNA:   3'- aGUCCUGuuGAGGU-AGG---GGGUC-CUGU- -5'
29070 3' -56.1 NC_006146.1 + 13599 0.66 0.918211
Target:  5'- cCAGGGCc-CUCCAgUCCagaCCCAGaGACGc -3'
miRNA:   3'- aGUCCUGuuGAGGU-AGG---GGGUC-CUGU- -5'
29070 3' -56.1 NC_006146.1 + 16677 0.66 0.918211
Target:  5'- cCAGGGCc-CUCCAgUCCagaCCCAGaGACGc -3'
miRNA:   3'- aGUCCUGuuGAGGU-AGG---GGGUC-CUGU- -5'
29070 3' -56.1 NC_006146.1 + 109350 0.66 0.918211
Target:  5'- cUCGGGguggggaauagACAGCgagggCGUCCCCC-GGACAc -3'
miRNA:   3'- -AGUCC-----------UGUUGag---GUAGGGGGuCCUGU- -5'
29070 3' -56.1 NC_006146.1 + 19755 0.66 0.918211
Target:  5'- cCAGGGCc-CUCCAgUCCagaCCCAGaGACGc -3'
miRNA:   3'- aGUCCUGuuGAGGU-AGG---GGGUC-CUGU- -5'
29070 3' -56.1 NC_006146.1 + 121521 0.66 0.918211
Target:  5'- gCAGGACAACggCAUCCCCguGc--- -3'
miRNA:   3'- aGUCCUGUUGagGUAGGGGguCcugu -5'
29070 3' -56.1 NC_006146.1 + 136802 0.66 0.918211
Target:  5'- aCGGGGCGcgcugggucGCggCUGcCCCCCGGGACc -3'
miRNA:   3'- aGUCCUGU---------UGa-GGUaGGGGGUCCUGu -5'
29070 3' -56.1 NC_006146.1 + 449 0.66 0.912427
Target:  5'- gCGGGACAcGCcCCcggGUCCCCCGGcACGc -3'
miRNA:   3'- aGUCCUGU-UGaGG---UAGGGGGUCcUGU- -5'
29070 3' -56.1 NC_006146.1 + 490 0.66 0.912427
Target:  5'- gCGGGACccccccCUCCGcccccgaggCCCCCAGGGgAg -3'
miRNA:   3'- aGUCCUGuu----GAGGUa--------GGGGGUCCUgU- -5'
29070 3' -56.1 NC_006146.1 + 3244 0.66 0.912427
Target:  5'- gCGGGACAcGCcCCcggGUCCCCCGGcACGc -3'
miRNA:   3'- aGUCCUGU-UGaGG---UAGGGGGUCcUGU- -5'
29070 3' -56.1 NC_006146.1 + 3285 0.66 0.912427
Target:  5'- gCGGGACccccccCUCCGcccccgaggCCCCCAGGGgAg -3'
miRNA:   3'- aGUCCUGuu----GAGGUa--------GGGGGUCCUgU- -5'
29070 3' -56.1 NC_006146.1 + 99226 0.66 0.912427
Target:  5'- aUAGGACcuAGCUCCAgUCCuggCUCAGGAUu -3'
miRNA:   3'- aGUCCUG--UUGAGGU-AGG---GGGUCCUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.