miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29070 3' -56.1 NC_006146.1 + 105689 0.66 0.92376
Target:  5'- cUCuGGACGcccggGCUCCcagggCCCCCAGaGCGc -3'
miRNA:   3'- -AGuCCUGU-----UGAGGua---GGGGGUCcUGU- -5'
29070 3' -56.1 NC_006146.1 + 449 0.66 0.912427
Target:  5'- gCGGGACAcGCcCCcggGUCCCCCGGcACGc -3'
miRNA:   3'- aGUCCUGU-UGaGG---UAGGGGGUCcUGU- -5'
29070 3' -56.1 NC_006146.1 + 123720 0.66 0.908844
Target:  5'- cUCGGGGCGGCggcgggCUcUCCCCaguaugccuccucaGGGACAg -3'
miRNA:   3'- -AGUCCUGUUGa-----GGuAGGGGg-------------UCCUGU- -5'
29070 3' -56.1 NC_006146.1 + 70795 0.66 0.900158
Target:  5'- cCGGGACcgcaGACUCCuGUCCaccguCCGGGugGa -3'
miRNA:   3'- aGUCCUG----UUGAGG-UAGGg----GGUCCugU- -5'
29070 3' -56.1 NC_006146.1 + 62960 0.66 0.900158
Target:  5'- -aGGGGCAAC-CCAauacugagCUCCCAGGAg- -3'
miRNA:   3'- agUCCUGUUGaGGUa-------GGGGGUCCUgu -5'
29070 3' -56.1 NC_006146.1 + 13933 0.66 0.900158
Target:  5'- gCGGGugGGC-CCGggggagCCCAGGACAa -3'
miRNA:   3'- aGUCCugUUGaGGUagg---GGGUCCUGU- -5'
29070 3' -56.1 NC_006146.1 + 40805 0.66 0.899521
Target:  5'- aCAGGACGACUUCAuuaaguuuaagagUCCCCUGGu--- -3'
miRNA:   3'- aGUCCUGUUGAGGU-------------AGGGGGUCcugu -5'
29070 3' -56.1 NC_006146.1 + 68511 0.66 0.900158
Target:  5'- -aGGGACAGauaCCAccagcUCCCCgAGGACc -3'
miRNA:   3'- agUCCUGUUga-GGU-----AGGGGgUCCUGu -5'
29070 3' -56.1 NC_006146.1 + 167888 0.66 0.900158
Target:  5'- cCGGGGCGGC-CCGgggaCCCUCgcgGGGGCAc -3'
miRNA:   3'- aGUCCUGUUGaGGUa---GGGGG---UCCUGU- -5'
29070 3' -56.1 NC_006146.1 + 490 0.66 0.912427
Target:  5'- gCGGGACccccccCUCCGcccccgaggCCCCCAGGGgAg -3'
miRNA:   3'- aGUCCUGuu----GAGGUa--------GGGGGUCCUgU- -5'
29070 3' -56.1 NC_006146.1 + 1380 0.66 0.912427
Target:  5'- gCGGGACAcGCcCCcggGUCCCCCGGcACGc -3'
miRNA:   3'- aGUCCUGU-UGaGG---UAGGGGGUCcUGU- -5'
29070 3' -56.1 NC_006146.1 + 1421 0.66 0.912427
Target:  5'- gCGGGACccccccCUCCGcccccgaggCCCCCAGGGgAg -3'
miRNA:   3'- aGUCCUGuu----GAGGUa--------GGGGGUCCUgU- -5'
29070 3' -56.1 NC_006146.1 + 76249 0.66 0.92376
Target:  5'- ---cGACcGCUUCGUggUCCCCAGGGCGg -3'
miRNA:   3'- agucCUGuUGAGGUA--GGGGGUCCUGU- -5'
29070 3' -56.1 NC_006146.1 + 136802 0.66 0.918211
Target:  5'- aCGGGGCGcgcugggucGCggCUGcCCCCCGGGACc -3'
miRNA:   3'- aGUCCUGU---------UGa-GGUaGGGGGUCCUGu -5'
29070 3' -56.1 NC_006146.1 + 99226 0.66 0.912427
Target:  5'- aUAGGACcuAGCUCCAgUCCuggCUCAGGAUu -3'
miRNA:   3'- aGUCCUG--UUGAGGU-AGG---GGGUCCUGu -5'
29070 3' -56.1 NC_006146.1 + 106662 0.66 0.912427
Target:  5'- gUCAGGGCcg-UCC-UCUCCCcGGGCAc -3'
miRNA:   3'- -AGUCCUGuugAGGuAGGGGGuCCUGU- -5'
29070 3' -56.1 NC_006146.1 + 3285 0.66 0.912427
Target:  5'- gCGGGACccccccCUCCGcccccgaggCCCCCAGGGgAg -3'
miRNA:   3'- aGUCCUGuu----GAGGUa--------GGGGGUCCUgU- -5'
29070 3' -56.1 NC_006146.1 + 3244 0.66 0.912427
Target:  5'- gCGGGACAcGCcCCcggGUCCCCCGGcACGc -3'
miRNA:   3'- aGUCCUGU-UGaGG---UAGGGGGUCcUGU- -5'
29070 3' -56.1 NC_006146.1 + 2353 0.66 0.912427
Target:  5'- gCGGGACccccccCUCCGcccccgaggCCCCCAGGGgAg -3'
miRNA:   3'- aGUCCUGuu----GAGGUa--------GGGGGUCCUgU- -5'
29070 3' -56.1 NC_006146.1 + 2312 0.66 0.912427
Target:  5'- gCGGGACAcGCcCCcggGUCCCCCGGcACGc -3'
miRNA:   3'- aGUCCUGU-UGaGG---UAGGGGGUCcUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.