Results 21 - 40 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29070 | 3' | -56.1 | NC_006146.1 | + | 68511 | 0.66 | 0.900158 |
Target: 5'- -aGGGACAGauaCCAccagcUCCCCgAGGACc -3' miRNA: 3'- agUCCUGUUga-GGU-----AGGGGgUCCUGu -5' |
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29070 | 3' | -56.1 | NC_006146.1 | + | 2312 | 0.66 | 0.912427 |
Target: 5'- gCGGGACAcGCcCCcggGUCCCCCGGcACGc -3' miRNA: 3'- aGUCCUGU-UGaGG---UAGGGGGUCcUGU- -5' |
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29070 | 3' | -56.1 | NC_006146.1 | + | 2353 | 0.66 | 0.912427 |
Target: 5'- gCGGGACccccccCUCCGcccccgaggCCCCCAGGGgAg -3' miRNA: 3'- aGUCCUGuu----GAGGUa--------GGGGGUCCUgU- -5' |
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29070 | 3' | -56.1 | NC_006146.1 | + | 3244 | 0.66 | 0.912427 |
Target: 5'- gCGGGACAcGCcCCcggGUCCCCCGGcACGc -3' miRNA: 3'- aGUCCUGU-UGaGG---UAGGGGGUCcUGU- -5' |
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29070 | 3' | -56.1 | NC_006146.1 | + | 3285 | 0.66 | 0.912427 |
Target: 5'- gCGGGACccccccCUCCGcccccgaggCCCCCAGGGgAg -3' miRNA: 3'- aGUCCUGuu----GAGGUa--------GGGGGUCCUgU- -5' |
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29070 | 3' | -56.1 | NC_006146.1 | + | 106662 | 0.66 | 0.912427 |
Target: 5'- gUCAGGGCcg-UCC-UCUCCCcGGGCAc -3' miRNA: 3'- -AGUCCUGuugAGGuAGGGGGuCCUGU- -5' |
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29070 | 3' | -56.1 | NC_006146.1 | + | 99226 | 0.66 | 0.912427 |
Target: 5'- aUAGGACcuAGCUCCAgUCCuggCUCAGGAUu -3' miRNA: 3'- aGUCCUG--UUGAGGU-AGG---GGGUCCUGu -5' |
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29070 | 3' | -56.1 | NC_006146.1 | + | 136802 | 0.66 | 0.918211 |
Target: 5'- aCGGGGCGcgcugggucGCggCUGcCCCCCGGGACc -3' miRNA: 3'- aGUCCUGU---------UGa-GGUaGGGGGUCCUGu -5' |
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29070 | 3' | -56.1 | NC_006146.1 | + | 76249 | 0.66 | 0.92376 |
Target: 5'- ---cGACcGCUUCGUggUCCCCAGGGCGg -3' miRNA: 3'- agucCUGuUGAGGUA--GGGGGUCCUGU- -5' |
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29070 | 3' | -56.1 | NC_006146.1 | + | 1421 | 0.66 | 0.912427 |
Target: 5'- gCGGGACccccccCUCCGcccccgaggCCCCCAGGGgAg -3' miRNA: 3'- aGUCCUGuu----GAGGUa--------GGGGGUCCUgU- -5' |
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29070 | 3' | -56.1 | NC_006146.1 | + | 1380 | 0.66 | 0.912427 |
Target: 5'- gCGGGACAcGCcCCcggGUCCCCCGGcACGc -3' miRNA: 3'- aGUCCUGU-UGaGG---UAGGGGGUCcUGU- -5' |
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29070 | 3' | -56.1 | NC_006146.1 | + | 490 | 0.66 | 0.912427 |
Target: 5'- gCGGGACccccccCUCCGcccccgaggCCCCCAGGGgAg -3' miRNA: 3'- aGUCCUGuu----GAGGUa--------GGGGGUCCUgU- -5' |
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29070 | 3' | -56.1 | NC_006146.1 | + | 46357 | 0.66 | 0.92376 |
Target: 5'- -gAGGACcGCgUCCGacagcagcUCCCCCAGGcCc -3' miRNA: 3'- agUCCUGuUG-AGGU--------AGGGGGUCCuGu -5' |
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29070 | 3' | -56.1 | NC_006146.1 | + | 13933 | 0.66 | 0.900158 |
Target: 5'- gCGGGugGGC-CCGggggagCCCAGGACAa -3' miRNA: 3'- aGUCCugUUGaGGUagg---GGGUCCUGU- -5' |
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29070 | 3' | -56.1 | NC_006146.1 | + | 62960 | 0.66 | 0.900158 |
Target: 5'- -aGGGGCAAC-CCAauacugagCUCCCAGGAg- -3' miRNA: 3'- agUCCUGUUGaGGUa-------GGGGGUCCUgu -5' |
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29070 | 3' | -56.1 | NC_006146.1 | + | 70795 | 0.66 | 0.900158 |
Target: 5'- cCGGGACcgcaGACUCCuGUCCaccguCCGGGugGa -3' miRNA: 3'- aGUCCUG----UUGAGG-UAGGg----GGUCCugU- -5' |
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29070 | 3' | -56.1 | NC_006146.1 | + | 123720 | 0.66 | 0.908844 |
Target: 5'- cUCGGGGCGGCggcgggCUcUCCCCaguaugccuccucaGGGACAg -3' miRNA: 3'- -AGUCCUGUUGa-----GGuAGGGGg-------------UCCUGU- -5' |
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29070 | 3' | -56.1 | NC_006146.1 | + | 449 | 0.66 | 0.912427 |
Target: 5'- gCGGGACAcGCcCCcggGUCCCCCGGcACGc -3' miRNA: 3'- aGUCCUGU-UGaGG---UAGGGGGUCcUGU- -5' |
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29070 | 3' | -56.1 | NC_006146.1 | + | 105689 | 0.66 | 0.92376 |
Target: 5'- cUCuGGACGcccggGCUCCcagggCCCCCAGaGCGc -3' miRNA: 3'- -AGuCCUGU-----UGAGGua---GGGGGUCcUGU- -5' |
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29070 | 3' | -56.1 | NC_006146.1 | + | 45757 | 0.67 | 0.880042 |
Target: 5'- -gGGGGCAGCUCC-UCUCCUacAGcGACu -3' miRNA: 3'- agUCCUGUUGAGGuAGGGGG--UC-CUGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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