Results 21 - 40 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29070 | 3' | -56.1 | NC_006146.1 | + | 141984 | 0.68 | 0.850193 |
Target: 5'- aCGGGGCuGCUCgGgUCCCUucuCGGGACGu -3' miRNA: 3'- aGUCCUGuUGAGgU-AGGGG---GUCCUGU- -5' |
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29070 | 3' | -56.1 | NC_006146.1 | + | 61931 | 0.68 | 0.834071 |
Target: 5'- aUCAGGG--GCUCCAgggCCCUgguccaCGGGACGg -3' miRNA: 3'- -AGUCCUguUGAGGUa--GGGG------GUCCUGU- -5' |
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29070 | 3' | -56.1 | NC_006146.1 | + | 114656 | 0.68 | 0.825734 |
Target: 5'- -gAGGACGGCcccgccUCCG-CCCCCGcGGACc -3' miRNA: 3'- agUCCUGUUG------AGGUaGGGGGU-CCUGu -5' |
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29070 | 3' | -56.1 | NC_006146.1 | + | 131642 | 0.68 | 0.817223 |
Target: 5'- cCGGGGCccacAC-CCGUUCCUCAGGGCc -3' miRNA: 3'- aGUCCUGu---UGaGGUAGGGGGUCCUGu -5' |
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29070 | 3' | -56.1 | NC_006146.1 | + | 117979 | 0.68 | 0.808545 |
Target: 5'- --cGGACGAggCCAgcgCCCCCGGGGg- -3' miRNA: 3'- aguCCUGUUgaGGUa--GGGGGUCCUgu -5' |
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29070 | 3' | -56.1 | NC_006146.1 | + | 10175 | 0.68 | 0.817223 |
Target: 5'- uUCAGGGCccuauacGCUgUGUUCaCCCAGGACGa -3' miRNA: 3'- -AGUCCUGu------UGAgGUAGG-GGGUCCUGU- -5' |
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29070 | 3' | -56.1 | NC_006146.1 | + | 154296 | 0.68 | 0.850193 |
Target: 5'- aCGGGGCuGCUCgGgUCCCUucuCGGGACGu -3' miRNA: 3'- aGUCCUGuUGAGgU-AGGGG---GUCCUGU- -5' |
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29070 | 3' | -56.1 | NC_006146.1 | + | 157374 | 0.68 | 0.850193 |
Target: 5'- aCGGGGCuGCUCgGgUCCCUucuCGGGACGu -3' miRNA: 3'- aGUCCUGuUGAGgU-AGGGG---GUCCUGU- -5' |
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29070 | 3' | -56.1 | NC_006146.1 | + | 133623 | 0.68 | 0.807669 |
Target: 5'- cCAGGGCuACUCgccaucgUAUCCCCCAuugcGGAUAc -3' miRNA: 3'- aGUCCUGuUGAG-------GUAGGGGGU----CCUGU- -5' |
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29070 | 3' | -56.1 | NC_006146.1 | + | 93941 | 0.68 | 0.808545 |
Target: 5'- gCGGGGCuccgcuCUCCGUCCCaggcgaccuCCAGcGGCAg -3' miRNA: 3'- aGUCCUGuu----GAGGUAGGG---------GGUC-CUGU- -5' |
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29070 | 3' | -56.1 | NC_006146.1 | + | 131030 | 0.68 | 0.817223 |
Target: 5'- cUCAGccuCAGcCUCC-UCCCCCGGGcACAc -3' miRNA: 3'- -AGUCcu-GUU-GAGGuAGGGGGUCC-UGU- -5' |
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29070 | 3' | -56.1 | NC_006146.1 | + | 101508 | 0.68 | 0.824891 |
Target: 5'- gUCAGGAUAugUcggaucuucaaaaCCAUgCgCCAGGGCAc -3' miRNA: 3'- -AGUCCUGUugA-------------GGUAgGgGGUCCUGU- -5' |
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29070 | 3' | -56.1 | NC_006146.1 | + | 54484 | 0.68 | 0.825734 |
Target: 5'- cUCAGGAUGGCgUCGUgggaggagacUCCCCAGGGCc -3' miRNA: 3'- -AGUCCUGUUGaGGUA----------GGGGGUCCUGu -5' |
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29070 | 3' | -56.1 | NC_006146.1 | + | 98340 | 0.68 | 0.834071 |
Target: 5'- cCGGGcGCGGC-CCGUCCCgguCCAGGAg- -3' miRNA: 3'- aGUCC-UGUUGaGGUAGGG---GGUCCUgu -5' |
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29070 | 3' | -56.1 | NC_006146.1 | + | 18940 | 0.68 | 0.834071 |
Target: 5'- cCAGGuccCAACaCCcgGUCCCCCuaguGGACAg -3' miRNA: 3'- aGUCCu--GUUGaGG--UAGGGGGu---CCUGU- -5' |
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29070 | 3' | -56.1 | NC_006146.1 | + | 165942 | 0.67 | 0.872894 |
Target: 5'- cCAGGA-GGCUCuCGUggccccuggUCCCCGGGGCAc -3' miRNA: 3'- aGUCCUgUUGAG-GUA---------GGGGGUCCUGU- -5' |
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29070 | 3' | -56.1 | NC_006146.1 | + | 6820 | 0.67 | 0.868503 |
Target: 5'- aUCAGGACGGCUgacgguaaCCAuugaugccccucccuUcaCCCCCGGGAUu -3' miRNA: 3'- -AGUCCUGUUGA--------GGU---------------A--GGGGGUCCUGu -5' |
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29070 | 3' | -56.1 | NC_006146.1 | + | 132089 | 0.67 | 0.865533 |
Target: 5'- cUCAGGGCcuGGCUgCAgaugugcaCCCCgCAGGACu -3' miRNA: 3'- -AGUCCUG--UUGAgGUa-------GGGG-GUCCUGu -5' |
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29070 | 3' | -56.1 | NC_006146.1 | + | 59627 | 0.67 | 0.857964 |
Target: 5'- -gAGGAaaaaguGCUCCAgg-CCCAGGACAa -3' miRNA: 3'- agUCCUgu----UGAGGUaggGGGUCCUGU- -5' |
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29070 | 3' | -56.1 | NC_006146.1 | + | 57827 | 0.67 | 0.857964 |
Target: 5'- cCGGGu--GCUCCAaCCUCCAGG-CAg -3' miRNA: 3'- aGUCCuguUGAGGUaGGGGGUCCuGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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