miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29070 3' -56.1 NC_006146.1 + 101098 1.08 0.003354
Target:  5'- cUCAGGACAACUCCAUCCCCCAGGACAc -3'
miRNA:   3'- -AGUCCUGUUGAGGUAGGGGGUCCUGU- -5'
29070 3' -56.1 NC_006146.1 + 99536 0.74 0.513597
Target:  5'- gUAGGGCuggAAgUCCGagCCCCCGGGGCAg -3'
miRNA:   3'- aGUCCUG---UUgAGGUa-GGGGGUCCUGU- -5'
29070 3' -56.1 NC_006146.1 + 139147 0.73 0.533142
Target:  5'- aCGGGG--GCUcCCGUCCCCCGGGGgGg -3'
miRNA:   3'- aGUCCUguUGA-GGUAGGGGGUCCUgU- -5'
29070 3' -56.1 NC_006146.1 + 59189 0.73 0.583039
Target:  5'- uUguGGugGccuGCUCCAUCCUgCAGGGCu -3'
miRNA:   3'- -AguCCugU---UGAGGUAGGGgGUCCUGu -5'
29070 3' -56.1 NC_006146.1 + 11085 0.72 0.597201
Target:  5'- -aGGGACAGCUCCAagccggaggacuucuUCCCCgAuGGGCu -3'
miRNA:   3'- agUCCUGUUGAGGU---------------AGGGGgU-CCUGu -5'
29070 3' -56.1 NC_006146.1 + 86953 0.72 0.633797
Target:  5'- cCuGGAUguuGACUCCAuuaUCCCCC-GGACAc -3'
miRNA:   3'- aGuCCUG---UUGAGGU---AGGGGGuCCUGU- -5'
29070 3' -56.1 NC_006146.1 + 50533 0.72 0.643975
Target:  5'- gUCAGGAgCcGCUCCAggUCCCGGGugGg -3'
miRNA:   3'- -AGUCCU-GuUGAGGUagGGGGUCCugU- -5'
29070 3' -56.1 NC_006146.1 + 55384 0.72 0.643975
Target:  5'- cUCAGcGCAauggcacgcuGCUCCGggaCCCCAGGACGu -3'
miRNA:   3'- -AGUCcUGU----------UGAGGUag-GGGGUCCUGU- -5'
29070 3' -56.1 NC_006146.1 + 120035 0.71 0.683505
Target:  5'- -gAGGACAAuggccaacgcCUCuCAUCCCCCAccagccuGGACAc -3'
miRNA:   3'- agUCCUGUU----------GAG-GUAGGGGGU-------CCUGU- -5'
29070 3' -56.1 NC_006146.1 + 106523 0.71 0.684512
Target:  5'- aCAGGugGGCg-CAUCCCCUgguGGGCAc -3'
miRNA:   3'- aGUCCugUUGagGUAGGGGGu--CCUGU- -5'
29070 3' -56.1 NC_006146.1 + 4932 0.7 0.704558
Target:  5'- gUCGGGugGccguGCUCUGUgCCCCgGGGACc -3'
miRNA:   3'- -AGUCCugU----UGAGGUA-GGGGgUCCUGu -5'
29070 3' -56.1 NC_006146.1 + 62402 0.7 0.724361
Target:  5'- -aAGGuuauCGACUCCGgaaCCCCGGGugGg -3'
miRNA:   3'- agUCCu---GUUGAGGUag-GGGGUCCugU- -5'
29070 3' -56.1 NC_006146.1 + 110902 0.7 0.747705
Target:  5'- aCGGGGCcgcguuggccuugcACUCCAUgaCCCCCAGGuCGg -3'
miRNA:   3'- aGUCCUGu-------------UGAGGUA--GGGGGUCCuGU- -5'
29070 3' -56.1 NC_006146.1 + 116212 0.69 0.760115
Target:  5'- cCAGGACAgucuGCUCCGUCCgCUugucggcgggauucGGGGCc -3'
miRNA:   3'- aGUCCUGU----UGAGGUAGGgGG--------------UCCUGu -5'
29070 3' -56.1 NC_006146.1 + 129768 0.69 0.772337
Target:  5'- gUCAGcGCAcGC-CCcUCCCCCGGGACc -3'
miRNA:   3'- -AGUCcUGU-UGaGGuAGGGGGUCCUGu -5'
29070 3' -56.1 NC_006146.1 + 59475 0.69 0.790724
Target:  5'- --cGGACu-CUCUAUCCCCaAGGAUAu -3'
miRNA:   3'- aguCCUGuuGAGGUAGGGGgUCCUGU- -5'
29070 3' -56.1 NC_006146.1 + 81495 0.69 0.803262
Target:  5'- cCAGGccuCAAacucCUCCAUCCCCCcaucgcuggaugguaGGGACc -3'
miRNA:   3'- aGUCCu--GUU----GAGGUAGGGGG---------------UCCUGu -5'
29070 3' -56.1 NC_006146.1 + 133623 0.68 0.807669
Target:  5'- cCAGGGCuACUCgccaucgUAUCCCCCAuugcGGAUAc -3'
miRNA:   3'- aGUCCUGuUGAG-------GUAGGGGGU----CCUGU- -5'
29070 3' -56.1 NC_006146.1 + 93941 0.68 0.808545
Target:  5'- gCGGGGCuccgcuCUCCGUCCCaggcgaccuCCAGcGGCAg -3'
miRNA:   3'- aGUCCUGuu----GAGGUAGGG---------GGUC-CUGU- -5'
29070 3' -56.1 NC_006146.1 + 117979 0.68 0.808545
Target:  5'- --cGGACGAggCCAgcgCCCCCGGGGg- -3'
miRNA:   3'- aguCCUGUUgaGGUa--GGGGGUCCUgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.