miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29070 3' -56.1 NC_006146.1 + 131030 0.68 0.817223
Target:  5'- cUCAGccuCAGcCUCC-UCCCCCGGGcACAc -3'
miRNA:   3'- -AGUCcu-GUU-GAGGuAGGGGGUCC-UGU- -5'
29070 3' -56.1 NC_006146.1 + 10175 0.68 0.817223
Target:  5'- uUCAGGGCccuauacGCUgUGUUCaCCCAGGACGa -3'
miRNA:   3'- -AGUCCUGu------UGAgGUAGG-GGGUCCUGU- -5'
29070 3' -56.1 NC_006146.1 + 131642 0.68 0.817223
Target:  5'- cCGGGGCccacAC-CCGUUCCUCAGGGCc -3'
miRNA:   3'- aGUCCUGu---UGaGGUAGGGGGUCCUGu -5'
29070 3' -56.1 NC_006146.1 + 101508 0.68 0.824891
Target:  5'- gUCAGGAUAugUcggaucuucaaaaCCAUgCgCCAGGGCAc -3'
miRNA:   3'- -AGUCCUGUugA-------------GGUAgGgGGUCCUGU- -5'
29070 3' -56.1 NC_006146.1 + 114656 0.68 0.825734
Target:  5'- -gAGGACGGCcccgccUCCG-CCCCCGcGGACc -3'
miRNA:   3'- agUCCUGUUG------AGGUaGGGGGU-CCUGu -5'
29070 3' -56.1 NC_006146.1 + 54484 0.68 0.825734
Target:  5'- cUCAGGAUGGCgUCGUgggaggagacUCCCCAGGGCc -3'
miRNA:   3'- -AGUCCUGUUGaGGUA----------GGGGGUCCUGu -5'
29070 3' -56.1 NC_006146.1 + 98340 0.68 0.834071
Target:  5'- cCGGGcGCGGC-CCGUCCCgguCCAGGAg- -3'
miRNA:   3'- aGUCC-UGUUGaGGUAGGG---GGUCCUgu -5'
29070 3' -56.1 NC_006146.1 + 18940 0.68 0.834071
Target:  5'- cCAGGuccCAACaCCcgGUCCCCCuaguGGACAg -3'
miRNA:   3'- aGUCCu--GUUGaGG--UAGGGGGu---CCUGU- -5'
29070 3' -56.1 NC_006146.1 + 61931 0.68 0.834071
Target:  5'- aUCAGGG--GCUCCAgggCCCUgguccaCGGGACGg -3'
miRNA:   3'- -AGUCCUguUGAGGUa--GGGG------GUCCUGU- -5'
29070 3' -56.1 NC_006146.1 + 154296 0.68 0.850193
Target:  5'- aCGGGGCuGCUCgGgUCCCUucuCGGGACGu -3'
miRNA:   3'- aGUCCUGuUGAGgU-AGGGG---GUCCUGU- -5'
29070 3' -56.1 NC_006146.1 + 141984 0.68 0.850193
Target:  5'- aCGGGGCuGCUCgGgUCCCUucuCGGGACGu -3'
miRNA:   3'- aGUCCUGuUGAGgU-AGGGG---GUCCUGU- -5'
29070 3' -56.1 NC_006146.1 + 145062 0.68 0.850193
Target:  5'- aCGGGGCuGCUCgGgUCCCUucuCGGGACGu -3'
miRNA:   3'- aGUCCUGuUGAGgU-AGGGG---GUCCUGU- -5'
29070 3' -56.1 NC_006146.1 + 148140 0.68 0.850193
Target:  5'- aCGGGGCuGCUCgGgUCCCUucuCGGGACGu -3'
miRNA:   3'- aGUCCUGuUGAGgU-AGGGG---GUCCUGU- -5'
29070 3' -56.1 NC_006146.1 + 151218 0.68 0.850193
Target:  5'- aCGGGGCuGCUCgGgUCCCUucuCGGGACGu -3'
miRNA:   3'- aGUCCUGuUGAGgU-AGGGG---GUCCUGU- -5'
29070 3' -56.1 NC_006146.1 + 157374 0.68 0.850193
Target:  5'- aCGGGGCuGCUCgGgUCCCUucuCGGGACGu -3'
miRNA:   3'- aGUCCUGuUGAGgU-AGGGG---GUCCUGU- -5'
29070 3' -56.1 NC_006146.1 + 18358 0.67 0.857964
Target:  5'- gUAGG-UAACUUCA-CCUCCAGGGCc -3'
miRNA:   3'- aGUCCuGUUGAGGUaGGGGGUCCUGu -5'
29070 3' -56.1 NC_006146.1 + 15280 0.67 0.857964
Target:  5'- gUAGG-UAACUUCA-CCUCCAGGGCc -3'
miRNA:   3'- aGUCCuGUUGAGGUaGGGGGUCCUGu -5'
29070 3' -56.1 NC_006146.1 + 57827 0.67 0.857964
Target:  5'- cCGGGu--GCUCCAaCCUCCAGG-CAg -3'
miRNA:   3'- aGUCCuguUGAGGUaGGGGGUCCuGU- -5'
29070 3' -56.1 NC_006146.1 + 59627 0.67 0.857964
Target:  5'- -gAGGAaaaaguGCUCCAgg-CCCAGGACAa -3'
miRNA:   3'- agUCCUgu----UGAGGUaggGGGUCCUGU- -5'
29070 3' -56.1 NC_006146.1 + 21436 0.67 0.857964
Target:  5'- gUAGG-UAACUUCA-CCUCCAGGGCc -3'
miRNA:   3'- aGUCCuGUUGAGGUaGGGGGUCCUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.