Results 21 - 40 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29070 | 3' | -56.1 | NC_006146.1 | + | 1421 | 0.66 | 0.912427 |
Target: 5'- gCGGGACccccccCUCCGcccccgaggCCCCCAGGGgAg -3' miRNA: 3'- aGUCCUGuu----GAGGUa--------GGGGGUCCUgU- -5' |
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29070 | 3' | -56.1 | NC_006146.1 | + | 1380 | 0.66 | 0.912427 |
Target: 5'- gCGGGACAcGCcCCcggGUCCCCCGGcACGc -3' miRNA: 3'- aGUCCUGU-UGaGG---UAGGGGGUCcUGU- -5' |
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29070 | 3' | -56.1 | NC_006146.1 | + | 490 | 0.66 | 0.912427 |
Target: 5'- gCGGGACccccccCUCCGcccccgaggCCCCCAGGGgAg -3' miRNA: 3'- aGUCCUGuu----GAGGUa--------GGGGGUCCUgU- -5' |
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29070 | 3' | -56.1 | NC_006146.1 | + | 3285 | 0.66 | 0.912427 |
Target: 5'- gCGGGACccccccCUCCGcccccgaggCCCCCAGGGgAg -3' miRNA: 3'- aGUCCUGuu----GAGGUa--------GGGGGUCCUgU- -5' |
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29070 | 3' | -56.1 | NC_006146.1 | + | 449 | 0.66 | 0.912427 |
Target: 5'- gCGGGACAcGCcCCcggGUCCCCCGGcACGc -3' miRNA: 3'- aGUCCUGU-UGaGG---UAGGGGGUCcUGU- -5' |
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29070 | 3' | -56.1 | NC_006146.1 | + | 121904 | 0.66 | 0.912427 |
Target: 5'- gCuGGGCAACgccCCAgCCuCCCAGGuCAg -3' miRNA: 3'- aGuCCUGUUGa--GGUaGG-GGGUCCuGU- -5' |
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29070 | 3' | -56.1 | NC_006146.1 | + | 123720 | 0.66 | 0.908844 |
Target: 5'- cUCGGGGCGGCggcgggCUcUCCCCaguaugccuccucaGGGACAg -3' miRNA: 3'- -AGUCCUGUUGa-----GGuAGGGGg-------------UCCUGU- -5' |
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29070 | 3' | -56.1 | NC_006146.1 | + | 111123 | 0.66 | 0.906409 |
Target: 5'- cCGGGuCGACacCCucaaCCCCCAGGugGc -3' miRNA: 3'- aGUCCuGUUGa-GGua--GGGGGUCCugU- -5' |
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29070 | 3' | -56.1 | NC_006146.1 | + | 62233 | 0.66 | 0.906409 |
Target: 5'- cUCuGGGCGcagaACUCCAUCaacgCCCCAG-ACAc -3' miRNA: 3'- -AGuCCUGU----UGAGGUAG----GGGGUCcUGU- -5' |
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29070 | 3' | -56.1 | NC_006146.1 | + | 122061 | 0.66 | 0.905177 |
Target: 5'- -gAGGACuuugaagccauCUUCAcCUCCCAGGACGa -3' miRNA: 3'- agUCCUGuu---------GAGGUaGGGGGUCCUGU- -5' |
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29070 | 3' | -56.1 | NC_006146.1 | + | 51797 | 0.66 | 0.902686 |
Target: 5'- uUUAGGggucugaggcgccaaGCcAC-CCGUUCCCCGGGGCGg -3' miRNA: 3'- -AGUCC---------------UGuUGaGGUAGGGGGUCCUGU- -5' |
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29070 | 3' | -56.1 | NC_006146.1 | + | 68511 | 0.66 | 0.900158 |
Target: 5'- -aGGGACAGauaCCAccagcUCCCCgAGGACc -3' miRNA: 3'- agUCCUGUUga-GGU-----AGGGGgUCCUGu -5' |
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29070 | 3' | -56.1 | NC_006146.1 | + | 167888 | 0.66 | 0.900158 |
Target: 5'- cCGGGGCGGC-CCGgggaCCCUCgcgGGGGCAc -3' miRNA: 3'- aGUCCUGUUGaGGUa---GGGGG---UCCUGU- -5' |
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29070 | 3' | -56.1 | NC_006146.1 | + | 169752 | 0.66 | 0.900158 |
Target: 5'- cCGGGGCGGC-CCGgggaCCCUCgcgGGGGCAc -3' miRNA: 3'- aGUCCUGUUGaGGUa---GGGGG---UCCUGU- -5' |
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29070 | 3' | -56.1 | NC_006146.1 | + | 62960 | 0.66 | 0.900158 |
Target: 5'- -aGGGGCAAC-CCAauacugagCUCCCAGGAg- -3' miRNA: 3'- agUCCUGUUGaGGUa-------GGGGGUCCUgu -5' |
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29070 | 3' | -56.1 | NC_006146.1 | + | 13933 | 0.66 | 0.900158 |
Target: 5'- gCGGGugGGC-CCGggggagCCCAGGACAa -3' miRNA: 3'- aGUCCugUUGaGGUagg---GGGUCCUGU- -5' |
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29070 | 3' | -56.1 | NC_006146.1 | + | 70795 | 0.66 | 0.900158 |
Target: 5'- cCGGGACcgcaGACUCCuGUCCaccguCCGGGugGa -3' miRNA: 3'- aGUCCUG----UUGAGG-UAGGg----GGUCCugU- -5' |
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29070 | 3' | -56.1 | NC_006146.1 | + | 168820 | 0.66 | 0.900158 |
Target: 5'- cCGGGGCGGC-CCGgggaCCCUCgcgGGGGCAc -3' miRNA: 3'- aGUCCUGUUGaGGUa---GGGGG---UCCUGU- -5' |
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29070 | 3' | -56.1 | NC_006146.1 | + | 40805 | 0.66 | 0.899521 |
Target: 5'- aCAGGACGACUUCAuuaaguuuaagagUCCCCUGGu--- -3' miRNA: 3'- aGUCCUGUUGAGGU-------------AGGGGGUCcugu -5' |
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29070 | 3' | -56.1 | NC_006146.1 | + | 123128 | 0.67 | 0.896297 |
Target: 5'- cUCAGGuaGCAcggcgagaagaggccGCUCuCcgUCCCCAGGGCc -3' miRNA: 3'- -AGUCC--UGU---------------UGAG-GuaGGGGGUCCUGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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