miRNA display CGI


Results 41 - 60 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29070 3' -56.1 NC_006146.1 + 113745 0.67 0.893678
Target:  5'- -aAGGuaGCGGC-CCGUCCCguCCGGGGCu -3'
miRNA:   3'- agUCC--UGUUGaGGUAGGG--GGUCCUGu -5'
29070 3' -56.1 NC_006146.1 + 145373 0.67 0.893678
Target:  5'- cUguGGACu-CUCCAUCCCagcgCCAGGuGCu -3'
miRNA:   3'- -AguCCUGuuGAGGUAGGG----GGUCC-UGu -5'
29070 3' -56.1 NC_006146.1 + 50261 0.67 0.886971
Target:  5'- cCAGGAC-ACguucaggCCGUCCUggCAGGACAc -3'
miRNA:   3'- aGUCCUGuUGa------GGUAGGGg-GUCCUGU- -5'
29070 3' -56.1 NC_006146.1 + 3692 0.67 0.886971
Target:  5'- aCGGGGgAaggccGCgcgCCGcCCCCCGGGACc -3'
miRNA:   3'- aGUCCUgU-----UGa--GGUaGGGGGUCCUGu -5'
29070 3' -56.1 NC_006146.1 + 1828 0.67 0.886971
Target:  5'- aCGGGGgAaggccGCgcgCCGcCCCCCGGGACc -3'
miRNA:   3'- aGUCCUgU-----UGa--GGUaGGGGGUCCUGu -5'
29070 3' -56.1 NC_006146.1 + 896 0.67 0.886971
Target:  5'- aCGGGGgAaggccGCgcgCCGcCCCCCGGGACc -3'
miRNA:   3'- aGUCCUgU-----UGa--GGUaGGGGGUCCUGu -5'
29070 3' -56.1 NC_006146.1 + 2760 0.67 0.886971
Target:  5'- aCGGGGgAaggccGCgcgCCGcCCCCCGGGACc -3'
miRNA:   3'- aGUCCUgU-----UGa--GGUaGGGGGUCCUGu -5'
29070 3' -56.1 NC_006146.1 + 19214 0.67 0.886288
Target:  5'- cUCAGGGCcugGACguggaguuugccgUCCucaacgCCCUCAGGGCAa -3'
miRNA:   3'- -AGUCCUG---UUG-------------AGGua----GGGGGUCCUGU- -5'
29070 3' -56.1 NC_006146.1 + 87126 0.67 0.880042
Target:  5'- aUCGGGGuCGACUgCGaccUCCCaCCAGGcCAc -3'
miRNA:   3'- -AGUCCU-GUUGAgGU---AGGG-GGUCCuGU- -5'
29070 3' -56.1 NC_006146.1 + 45757 0.67 0.880042
Target:  5'- -gGGGGCAGCUCC-UCUCCUacAGcGACu -3'
miRNA:   3'- agUCCUGUUGAGGuAGGGGG--UC-CUGu -5'
29070 3' -56.1 NC_006146.1 + 7080 0.67 0.872894
Target:  5'- gUCAGGAUu-CUCCAcCCUCCcuGGCAa -3'
miRNA:   3'- -AGUCCUGuuGAGGUaGGGGGucCUGU- -5'
29070 3' -56.1 NC_006146.1 + 165942 0.67 0.872894
Target:  5'- cCAGGA-GGCUCuCGUggccccuggUCCCCGGGGCAc -3'
miRNA:   3'- aGUCCUgUUGAG-GUA---------GGGGGUCCUGU- -5'
29070 3' -56.1 NC_006146.1 + 6820 0.67 0.868503
Target:  5'- aUCAGGACGGCUgacgguaaCCAuugaugccccucccuUcaCCCCCGGGAUu -3'
miRNA:   3'- -AGUCCUGUUGA--------GGU---------------A--GGGGGUCCUGu -5'
29070 3' -56.1 NC_006146.1 + 3540 0.67 0.865533
Target:  5'- uUCAGcGugGAauuuccCUCCAUCCCagAGGGCGa -3'
miRNA:   3'- -AGUC-CugUU------GAGGUAGGGggUCCUGU- -5'
29070 3' -56.1 NC_006146.1 + 35060 0.67 0.865533
Target:  5'- gUCccGugGACUCUGUCCCCCuguuaGGGugGc -3'
miRNA:   3'- -AGucCugUUGAGGUAGGGGG-----UCCugU- -5'
29070 3' -56.1 NC_006146.1 + 45976 0.67 0.865533
Target:  5'- cCGGGGCAGCUCCucgCCCCgcgugUAGGcCc -3'
miRNA:   3'- aGUCCUGUUGAGGua-GGGG-----GUCCuGu -5'
29070 3' -56.1 NC_006146.1 + 132089 0.67 0.865533
Target:  5'- cUCAGGGCcuGGCUgCAgaugugcaCCCCgCAGGACu -3'
miRNA:   3'- -AGUCCUG--UUGAgGUa-------GGGG-GUCCUGu -5'
29070 3' -56.1 NC_006146.1 + 15280 0.67 0.857964
Target:  5'- gUAGG-UAACUUCA-CCUCCAGGGCc -3'
miRNA:   3'- aGUCCuGUUGAGGUaGGGGGUCCUGu -5'
29070 3' -56.1 NC_006146.1 + 24514 0.67 0.857964
Target:  5'- gUAGG-UAACUUCA-CCUCCAGGGCc -3'
miRNA:   3'- aGUCCuGUUGAGGUaGGGGGUCCUGu -5'
29070 3' -56.1 NC_006146.1 + 59627 0.67 0.857964
Target:  5'- -gAGGAaaaaguGCUCCAgg-CCCAGGACAa -3'
miRNA:   3'- agUCCUgu----UGAGGUaggGGGUCCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.