miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29070 3' -56.1 NC_006146.1 + 449 0.66 0.912427
Target:  5'- gCGGGACAcGCcCCcggGUCCCCCGGcACGc -3'
miRNA:   3'- aGUCCUGU-UGaGG---UAGGGGGUCcUGU- -5'
29070 3' -56.1 NC_006146.1 + 490 0.66 0.912427
Target:  5'- gCGGGACccccccCUCCGcccccgaggCCCCCAGGGgAg -3'
miRNA:   3'- aGUCCUGuu----GAGGUa--------GGGGGUCCUgU- -5'
29070 3' -56.1 NC_006146.1 + 896 0.67 0.886971
Target:  5'- aCGGGGgAaggccGCgcgCCGcCCCCCGGGACc -3'
miRNA:   3'- aGUCCUgU-----UGa--GGUaGGGGGUCCUGu -5'
29070 3' -56.1 NC_006146.1 + 1380 0.66 0.912427
Target:  5'- gCGGGACAcGCcCCcggGUCCCCCGGcACGc -3'
miRNA:   3'- aGUCCUGU-UGaGG---UAGGGGGUCcUGU- -5'
29070 3' -56.1 NC_006146.1 + 1421 0.66 0.912427
Target:  5'- gCGGGACccccccCUCCGcccccgaggCCCCCAGGGgAg -3'
miRNA:   3'- aGUCCUGuu----GAGGUa--------GGGGGUCCUgU- -5'
29070 3' -56.1 NC_006146.1 + 1828 0.67 0.886971
Target:  5'- aCGGGGgAaggccGCgcgCCGcCCCCCGGGACc -3'
miRNA:   3'- aGUCCUgU-----UGa--GGUaGGGGGUCCUGu -5'
29070 3' -56.1 NC_006146.1 + 2312 0.66 0.912427
Target:  5'- gCGGGACAcGCcCCcggGUCCCCCGGcACGc -3'
miRNA:   3'- aGUCCUGU-UGaGG---UAGGGGGUCcUGU- -5'
29070 3' -56.1 NC_006146.1 + 2353 0.66 0.912427
Target:  5'- gCGGGACccccccCUCCGcccccgaggCCCCCAGGGgAg -3'
miRNA:   3'- aGUCCUGuu----GAGGUa--------GGGGGUCCUgU- -5'
29070 3' -56.1 NC_006146.1 + 2760 0.67 0.886971
Target:  5'- aCGGGGgAaggccGCgcgCCGcCCCCCGGGACc -3'
miRNA:   3'- aGUCCUgU-----UGa--GGUaGGGGGUCCUGu -5'
29070 3' -56.1 NC_006146.1 + 3244 0.66 0.912427
Target:  5'- gCGGGACAcGCcCCcggGUCCCCCGGcACGc -3'
miRNA:   3'- aGUCCUGU-UGaGG---UAGGGGGUCcUGU- -5'
29070 3' -56.1 NC_006146.1 + 3285 0.66 0.912427
Target:  5'- gCGGGACccccccCUCCGcccccgaggCCCCCAGGGgAg -3'
miRNA:   3'- aGUCCUGuu----GAGGUa--------GGGGGUCCUgU- -5'
29070 3' -56.1 NC_006146.1 + 3540 0.67 0.865533
Target:  5'- uUCAGcGugGAauuuccCUCCAUCCCagAGGGCGa -3'
miRNA:   3'- -AGUC-CugUU------GAGGUAGGGggUCCUGU- -5'
29070 3' -56.1 NC_006146.1 + 3692 0.67 0.886971
Target:  5'- aCGGGGgAaggccGCgcgCCGcCCCCCGGGACc -3'
miRNA:   3'- aGUCCUgU-----UGa--GGUaGGGGGUCCUGu -5'
29070 3' -56.1 NC_006146.1 + 4932 0.7 0.704558
Target:  5'- gUCGGGugGccguGCUCUGUgCCCCgGGGACc -3'
miRNA:   3'- -AGUCCugU----UGAGGUA-GGGGgUCCUGu -5'
29070 3' -56.1 NC_006146.1 + 6820 0.67 0.868503
Target:  5'- aUCAGGACGGCUgacgguaaCCAuugaugccccucccuUcaCCCCCGGGAUu -3'
miRNA:   3'- -AGUCCUGUUGA--------GGU---------------A--GGGGGUCCUGu -5'
29070 3' -56.1 NC_006146.1 + 7080 0.67 0.872894
Target:  5'- gUCAGGAUu-CUCCAcCCUCCcuGGCAa -3'
miRNA:   3'- -AGUCCUGuuGAGGUaGGGGGucCUGU- -5'
29070 3' -56.1 NC_006146.1 + 10175 0.68 0.817223
Target:  5'- uUCAGGGCccuauacGCUgUGUUCaCCCAGGACGa -3'
miRNA:   3'- -AGUCCUGu------UGAgGUAGG-GGGUCCUGU- -5'
29070 3' -56.1 NC_006146.1 + 11085 0.72 0.597201
Target:  5'- -aGGGACAGCUCCAagccggaggacuucuUCCCCgAuGGGCu -3'
miRNA:   3'- agUCCUGUUGAGGU---------------AGGGGgU-CCUGu -5'
29070 3' -56.1 NC_006146.1 + 13599 0.66 0.918211
Target:  5'- cCAGGGCc-CUCCAgUCCagaCCCAGaGACGc -3'
miRNA:   3'- aGUCCUGuuGAGGU-AGG---GGGUC-CUGU- -5'
29070 3' -56.1 NC_006146.1 + 13933 0.66 0.900158
Target:  5'- gCGGGugGGC-CCGggggagCCCAGGACAa -3'
miRNA:   3'- aGUCCugUUGaGGUagg---GGGUCCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.