miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29070 3' -56.1 NC_006146.1 + 15280 0.67 0.857964
Target:  5'- gUAGG-UAACUUCA-CCUCCAGGGCc -3'
miRNA:   3'- aGUCCuGUUGAGGUaGGGGGUCCUGu -5'
29070 3' -56.1 NC_006146.1 + 16677 0.66 0.918211
Target:  5'- cCAGGGCc-CUCCAgUCCagaCCCAGaGACGc -3'
miRNA:   3'- aGUCCUGuuGAGGU-AGG---GGGUC-CUGU- -5'
29070 3' -56.1 NC_006146.1 + 18358 0.67 0.857964
Target:  5'- gUAGG-UAACUUCA-CCUCCAGGGCc -3'
miRNA:   3'- aGUCCuGUUGAGGUaGGGGGUCCUGu -5'
29070 3' -56.1 NC_006146.1 + 18940 0.68 0.834071
Target:  5'- cCAGGuccCAACaCCcgGUCCCCCuaguGGACAg -3'
miRNA:   3'- aGUCCu--GUUGaGG--UAGGGGGu---CCUGU- -5'
29070 3' -56.1 NC_006146.1 + 19214 0.67 0.886288
Target:  5'- cUCAGGGCcugGACguggaguuugccgUCCucaacgCCCUCAGGGCAa -3'
miRNA:   3'- -AGUCCUG---UUG-------------AGGua----GGGGGUCCUGU- -5'
29070 3' -56.1 NC_006146.1 + 19755 0.66 0.918211
Target:  5'- cCAGGGCc-CUCCAgUCCagaCCCAGaGACGc -3'
miRNA:   3'- aGUCCUGuuGAGGU-AGG---GGGUC-CUGU- -5'
29070 3' -56.1 NC_006146.1 + 21436 0.67 0.857964
Target:  5'- gUAGG-UAACUUCA-CCUCCAGGGCc -3'
miRNA:   3'- aGUCCuGUUGAGGUaGGGGGUCCUGu -5'
29070 3' -56.1 NC_006146.1 + 22833 0.66 0.918211
Target:  5'- cCAGGGCc-CUCCAgUCCagaCCCAGaGACGc -3'
miRNA:   3'- aGUCCUGuuGAGGU-AGG---GGGUC-CUGU- -5'
29070 3' -56.1 NC_006146.1 + 24514 0.67 0.857964
Target:  5'- gUAGG-UAACUUCA-CCUCCAGGGCc -3'
miRNA:   3'- aGUCCuGUUGAGGUaGGGGGUCCUGu -5'
29070 3' -56.1 NC_006146.1 + 25911 0.66 0.918211
Target:  5'- cCAGGGCc-CUCCAgUCCagaCCCAGaGACGc -3'
miRNA:   3'- aGUCCUGuuGAGGU-AGG---GGGUC-CUGU- -5'
29070 3' -56.1 NC_006146.1 + 27592 0.67 0.857964
Target:  5'- gUAGG-UAACUUCA-CCUCCAGGGCc -3'
miRNA:   3'- aGUCCuGUUGAGGUaGGGGGUCCUGu -5'
29070 3' -56.1 NC_006146.1 + 28988 0.66 0.918211
Target:  5'- cCAGGGCc-CUCCAgUCCagaCCCAGaGACGc -3'
miRNA:   3'- aGUCCUGuuGAGGU-AGG---GGGUC-CUGU- -5'
29070 3' -56.1 NC_006146.1 + 33207 0.66 0.92376
Target:  5'- cCGGGu--GCUCCugGUgCUCCGGGGCAg -3'
miRNA:   3'- aGUCCuguUGAGG--UAgGGGGUCCUGU- -5'
29070 3' -56.1 NC_006146.1 + 35060 0.67 0.865533
Target:  5'- gUCccGugGACUCUGUCCCCCuguuaGGGugGc -3'
miRNA:   3'- -AGucCugUUGAGGUAGGGGG-----UCCugU- -5'
29070 3' -56.1 NC_006146.1 + 40805 0.66 0.899521
Target:  5'- aCAGGACGACUUCAuuaaguuuaagagUCCCCUGGu--- -3'
miRNA:   3'- aGUCCUGUUGAGGU-------------AGGGGGUCcugu -5'
29070 3' -56.1 NC_006146.1 + 45757 0.67 0.880042
Target:  5'- -gGGGGCAGCUCC-UCUCCUacAGcGACu -3'
miRNA:   3'- agUCCUGUUGAGGuAGGGGG--UC-CUGu -5'
29070 3' -56.1 NC_006146.1 + 45976 0.67 0.865533
Target:  5'- cCGGGGCAGCUCCucgCCCCgcgugUAGGcCc -3'
miRNA:   3'- aGUCCUGUUGAGGua-GGGG-----GUCCuGu -5'
29070 3' -56.1 NC_006146.1 + 46357 0.66 0.92376
Target:  5'- -gAGGACcGCgUCCGacagcagcUCCCCCAGGcCc -3'
miRNA:   3'- agUCCUGuUG-AGGU--------AGGGGGUCCuGu -5'
29070 3' -56.1 NC_006146.1 + 47304 0.66 0.92376
Target:  5'- cCGGGACucCUCCcgggCCUCCuGGAUg -3'
miRNA:   3'- aGUCCUGuuGAGGua--GGGGGuCCUGu -5'
29070 3' -56.1 NC_006146.1 + 50261 0.67 0.886971
Target:  5'- cCAGGAC-ACguucaggCCGUCCUggCAGGACAc -3'
miRNA:   3'- aGUCCUGuUGa------GGUAGGGg-GUCCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.