miRNA display CGI


Results 41 - 60 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29070 3' -56.1 NC_006146.1 + 50533 0.72 0.643975
Target:  5'- gUCAGGAgCcGCUCCAggUCCCGGGugGg -3'
miRNA:   3'- -AGUCCU-GuUGAGGUagGGGGUCCugU- -5'
29070 3' -56.1 NC_006146.1 + 51797 0.66 0.902686
Target:  5'- uUUAGGggucugaggcgccaaGCcAC-CCGUUCCCCGGGGCGg -3'
miRNA:   3'- -AGUCC---------------UGuUGaGGUAGGGGGUCCUGU- -5'
29070 3' -56.1 NC_006146.1 + 54484 0.68 0.825734
Target:  5'- cUCAGGAUGGCgUCGUgggaggagacUCCCCAGGGCc -3'
miRNA:   3'- -AGUCCUGUUGaGGUA----------GGGGGUCCUGu -5'
29070 3' -56.1 NC_006146.1 + 55384 0.72 0.643975
Target:  5'- cUCAGcGCAauggcacgcuGCUCCGggaCCCCAGGACGu -3'
miRNA:   3'- -AGUCcUGU----------UGAGGUag-GGGGUCCUGU- -5'
29070 3' -56.1 NC_006146.1 + 57248 0.67 0.857964
Target:  5'- aCGGGcccguggucaGCAAggCCAUCCCCCGGaGCAc -3'
miRNA:   3'- aGUCC----------UGUUgaGGUAGGGGGUCcUGU- -5'
29070 3' -56.1 NC_006146.1 + 57827 0.67 0.857964
Target:  5'- cCGGGu--GCUCCAaCCUCCAGG-CAg -3'
miRNA:   3'- aGUCCuguUGAGGUaGGGGGUCCuGU- -5'
29070 3' -56.1 NC_006146.1 + 59189 0.73 0.583039
Target:  5'- uUguGGugGccuGCUCCAUCCUgCAGGGCu -3'
miRNA:   3'- -AguCCugU---UGAGGUAGGGgGUCCUGu -5'
29070 3' -56.1 NC_006146.1 + 59475 0.69 0.790724
Target:  5'- --cGGACu-CUCUAUCCCCaAGGAUAu -3'
miRNA:   3'- aguCCUGuuGAGGUAGGGGgUCCUGU- -5'
29070 3' -56.1 NC_006146.1 + 59627 0.67 0.857964
Target:  5'- -gAGGAaaaaguGCUCCAgg-CCCAGGACAa -3'
miRNA:   3'- agUCCUgu----UGAGGUaggGGGUCCUGU- -5'
29070 3' -56.1 NC_006146.1 + 61931 0.68 0.834071
Target:  5'- aUCAGGG--GCUCCAgggCCCUgguccaCGGGACGg -3'
miRNA:   3'- -AGUCCUguUGAGGUa--GGGG------GUCCUGU- -5'
29070 3' -56.1 NC_006146.1 + 62233 0.66 0.906409
Target:  5'- cUCuGGGCGcagaACUCCAUCaacgCCCCAG-ACAc -3'
miRNA:   3'- -AGuCCUGU----UGAGGUAG----GGGGUCcUGU- -5'
29070 3' -56.1 NC_006146.1 + 62402 0.7 0.724361
Target:  5'- -aAGGuuauCGACUCCGgaaCCCCGGGugGg -3'
miRNA:   3'- agUCCu---GUUGAGGUag-GGGGUCCugU- -5'
29070 3' -56.1 NC_006146.1 + 62960 0.66 0.900158
Target:  5'- -aGGGGCAAC-CCAauacugagCUCCCAGGAg- -3'
miRNA:   3'- agUCCUGUUGaGGUa-------GGGGGUCCUgu -5'
29070 3' -56.1 NC_006146.1 + 68511 0.66 0.900158
Target:  5'- -aGGGACAGauaCCAccagcUCCCCgAGGACc -3'
miRNA:   3'- agUCCUGUUga-GGU-----AGGGGgUCCUGu -5'
29070 3' -56.1 NC_006146.1 + 70795 0.66 0.900158
Target:  5'- cCGGGACcgcaGACUCCuGUCCaccguCCGGGugGa -3'
miRNA:   3'- aGUCCUG----UUGAGG-UAGGg----GGUCCugU- -5'
29070 3' -56.1 NC_006146.1 + 75160 0.67 0.857964
Target:  5'- cCGGGGcCAACaCCAgcccCCCCCAcuGGGCAu -3'
miRNA:   3'- aGUCCU-GUUGaGGUa---GGGGGU--CCUGU- -5'
29070 3' -56.1 NC_006146.1 + 76249 0.66 0.92376
Target:  5'- ---cGACcGCUUCGUggUCCCCAGGGCGg -3'
miRNA:   3'- agucCUGuUGAGGUA--GGGGGUCCUGU- -5'
29070 3' -56.1 NC_006146.1 + 81495 0.69 0.803262
Target:  5'- cCAGGccuCAAacucCUCCAUCCCCCcaucgcuggaugguaGGGACc -3'
miRNA:   3'- aGUCCu--GUU----GAGGUAGGGGG---------------UCCUGu -5'
29070 3' -56.1 NC_006146.1 + 86953 0.72 0.633797
Target:  5'- cCuGGAUguuGACUCCAuuaUCCCCC-GGACAc -3'
miRNA:   3'- aGuCCUG---UUGAGGU---AGGGGGuCCUGU- -5'
29070 3' -56.1 NC_006146.1 + 87126 0.67 0.880042
Target:  5'- aUCGGGGuCGACUgCGaccUCCCaCCAGGcCAc -3'
miRNA:   3'- -AGUCCU-GUUGAgGU---AGGG-GGUCCuGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.