miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29070 3' -56.1 NC_006146.1 + 169752 0.66 0.900158
Target:  5'- cCGGGGCGGC-CCGgggaCCCUCgcgGGGGCAc -3'
miRNA:   3'- aGUCCUGUUGaGGUa---GGGGG---UCCUGU- -5'
29070 3' -56.1 NC_006146.1 + 168820 0.66 0.900158
Target:  5'- cCGGGGCGGC-CCGgggaCCCUCgcgGGGGCAc -3'
miRNA:   3'- aGUCCUGUUGaGGUa---GGGGG---UCCUGU- -5'
29070 3' -56.1 NC_006146.1 + 167888 0.66 0.900158
Target:  5'- cCGGGGCGGC-CCGgggaCCCUCgcgGGGGCAc -3'
miRNA:   3'- aGUCCUGUUGaGGUa---GGGGG---UCCUGU- -5'
29070 3' -56.1 NC_006146.1 + 165942 0.67 0.872894
Target:  5'- cCAGGA-GGCUCuCGUggccccuggUCCCCGGGGCAc -3'
miRNA:   3'- aGUCCUgUUGAG-GUA---------GGGGGUCCUGU- -5'
29070 3' -56.1 NC_006146.1 + 157374 0.68 0.850193
Target:  5'- aCGGGGCuGCUCgGgUCCCUucuCGGGACGu -3'
miRNA:   3'- aGUCCUGuUGAGgU-AGGGG---GUCCUGU- -5'
29070 3' -56.1 NC_006146.1 + 154296 0.68 0.850193
Target:  5'- aCGGGGCuGCUCgGgUCCCUucuCGGGACGu -3'
miRNA:   3'- aGUCCUGuUGAGgU-AGGGG---GUCCUGU- -5'
29070 3' -56.1 NC_006146.1 + 151218 0.68 0.850193
Target:  5'- aCGGGGCuGCUCgGgUCCCUucuCGGGACGu -3'
miRNA:   3'- aGUCCUGuUGAGgU-AGGGG---GUCCUGU- -5'
29070 3' -56.1 NC_006146.1 + 148140 0.68 0.850193
Target:  5'- aCGGGGCuGCUCgGgUCCCUucuCGGGACGu -3'
miRNA:   3'- aGUCCUGuUGAGgU-AGGGG---GUCCUGU- -5'
29070 3' -56.1 NC_006146.1 + 145373 0.67 0.893678
Target:  5'- cUguGGACu-CUCCAUCCCagcgCCAGGuGCu -3'
miRNA:   3'- -AguCCUGuuGAGGUAGGG----GGUCC-UGu -5'
29070 3' -56.1 NC_006146.1 + 145062 0.68 0.850193
Target:  5'- aCGGGGCuGCUCgGgUCCCUucuCGGGACGu -3'
miRNA:   3'- aGUCCUGuUGAGgU-AGGGG---GUCCUGU- -5'
29070 3' -56.1 NC_006146.1 + 141984 0.68 0.850193
Target:  5'- aCGGGGCuGCUCgGgUCCCUucuCGGGACGu -3'
miRNA:   3'- aGUCCUGuUGAGgU-AGGGG---GUCCUGU- -5'
29070 3' -56.1 NC_006146.1 + 139147 0.73 0.533142
Target:  5'- aCGGGG--GCUcCCGUCCCCCGGGGgGg -3'
miRNA:   3'- aGUCCUguUGA-GGUAGGGGGUCCUgU- -5'
29070 3' -56.1 NC_006146.1 + 136802 0.66 0.918211
Target:  5'- aCGGGGCGcgcugggucGCggCUGcCCCCCGGGACc -3'
miRNA:   3'- aGUCCUGU---------UGa-GGUaGGGGGUCCUGu -5'
29070 3' -56.1 NC_006146.1 + 133623 0.68 0.807669
Target:  5'- cCAGGGCuACUCgccaucgUAUCCCCCAuugcGGAUAc -3'
miRNA:   3'- aGUCCUGuUGAG-------GUAGGGGGU----CCUGU- -5'
29070 3' -56.1 NC_006146.1 + 132089 0.67 0.865533
Target:  5'- cUCAGGGCcuGGCUgCAgaugugcaCCCCgCAGGACu -3'
miRNA:   3'- -AGUCCUG--UUGAgGUa-------GGGG-GUCCUGu -5'
29070 3' -56.1 NC_006146.1 + 131642 0.68 0.817223
Target:  5'- cCGGGGCccacAC-CCGUUCCUCAGGGCc -3'
miRNA:   3'- aGUCCUGu---UGaGGUAGGGGGUCCUGu -5'
29070 3' -56.1 NC_006146.1 + 131030 0.68 0.817223
Target:  5'- cUCAGccuCAGcCUCC-UCCCCCGGGcACAc -3'
miRNA:   3'- -AGUCcu-GUU-GAGGuAGGGGGUCC-UGU- -5'
29070 3' -56.1 NC_006146.1 + 130476 0.66 0.92376
Target:  5'- aCGGGGCcGCUgCCG--CCCCGGGugGc -3'
miRNA:   3'- aGUCCUGuUGA-GGUagGGGGUCCugU- -5'
29070 3' -56.1 NC_006146.1 + 129768 0.69 0.772337
Target:  5'- gUCAGcGCAcGC-CCcUCCCCCGGGACc -3'
miRNA:   3'- -AGUCcUGU-UGaGGuAGGGGGUCCUGu -5'
29070 3' -56.1 NC_006146.1 + 123720 0.66 0.908844
Target:  5'- cUCGGGGCGGCggcgggCUcUCCCCaguaugccuccucaGGGACAg -3'
miRNA:   3'- -AGUCCUGUUGa-----GGuAGGGGg-------------UCCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.