miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29070 3' -56.1 NC_006146.1 + 123128 0.67 0.896297
Target:  5'- cUCAGGuaGCAcggcgagaagaggccGCUCuCcgUCCCCAGGGCc -3'
miRNA:   3'- -AGUCC--UGU---------------UGAG-GuaGGGGGUCCUGu -5'
29070 3' -56.1 NC_006146.1 + 122061 0.66 0.905177
Target:  5'- -gAGGACuuugaagccauCUUCAcCUCCCAGGACGa -3'
miRNA:   3'- agUCCUGuu---------GAGGUaGGGGGUCCUGU- -5'
29070 3' -56.1 NC_006146.1 + 121904 0.66 0.912427
Target:  5'- gCuGGGCAACgccCCAgCCuCCCAGGuCAg -3'
miRNA:   3'- aGuCCUGUUGa--GGUaGG-GGGUCCuGU- -5'
29070 3' -56.1 NC_006146.1 + 121521 0.66 0.918211
Target:  5'- gCAGGACAACggCAUCCCCguGc--- -3'
miRNA:   3'- aGUCCUGUUGagGUAGGGGguCcugu -5'
29070 3' -56.1 NC_006146.1 + 120035 0.71 0.683505
Target:  5'- -gAGGACAAuggccaacgcCUCuCAUCCCCCAccagccuGGACAc -3'
miRNA:   3'- agUCCUGUU----------GAG-GUAGGGGGU-------CCUGU- -5'
29070 3' -56.1 NC_006146.1 + 117979 0.68 0.808545
Target:  5'- --cGGACGAggCCAgcgCCCCCGGGGg- -3'
miRNA:   3'- aguCCUGUUgaGGUa--GGGGGUCCUgu -5'
29070 3' -56.1 NC_006146.1 + 116212 0.69 0.760115
Target:  5'- cCAGGACAgucuGCUCCGUCCgCUugucggcgggauucGGGGCc -3'
miRNA:   3'- aGUCCUGU----UGAGGUAGGgGG--------------UCCUGu -5'
29070 3' -56.1 NC_006146.1 + 114656 0.68 0.825734
Target:  5'- -gAGGACGGCcccgccUCCG-CCCCCGcGGACc -3'
miRNA:   3'- agUCCUGUUG------AGGUaGGGGGU-CCUGu -5'
29070 3' -56.1 NC_006146.1 + 113745 0.67 0.893678
Target:  5'- -aAGGuaGCGGC-CCGUCCCguCCGGGGCu -3'
miRNA:   3'- agUCC--UGUUGaGGUAGGG--GGUCCUGu -5'
29070 3' -56.1 NC_006146.1 + 111123 0.66 0.906409
Target:  5'- cCGGGuCGACacCCucaaCCCCCAGGugGc -3'
miRNA:   3'- aGUCCuGUUGa-GGua--GGGGGUCCugU- -5'
29070 3' -56.1 NC_006146.1 + 110902 0.7 0.747705
Target:  5'- aCGGGGCcgcguuggccuugcACUCCAUgaCCCCCAGGuCGg -3'
miRNA:   3'- aGUCCUGu-------------UGAGGUA--GGGGGUCCuGU- -5'
29070 3' -56.1 NC_006146.1 + 109350 0.66 0.918211
Target:  5'- cUCGGGguggggaauagACAGCgagggCGUCCCCC-GGACAc -3'
miRNA:   3'- -AGUCC-----------UGUUGag---GUAGGGGGuCCUGU- -5'
29070 3' -56.1 NC_006146.1 + 106662 0.66 0.912427
Target:  5'- gUCAGGGCcg-UCC-UCUCCCcGGGCAc -3'
miRNA:   3'- -AGUCCUGuugAGGuAGGGGGuCCUGU- -5'
29070 3' -56.1 NC_006146.1 + 106523 0.71 0.684512
Target:  5'- aCAGGugGGCg-CAUCCCCUgguGGGCAc -3'
miRNA:   3'- aGUCCugUUGagGUAGGGGGu--CCUGU- -5'
29070 3' -56.1 NC_006146.1 + 105689 0.66 0.92376
Target:  5'- cUCuGGACGcccggGCUCCcagggCCCCCAGaGCGc -3'
miRNA:   3'- -AGuCCUGU-----UGAGGua---GGGGGUCcUGU- -5'
29070 3' -56.1 NC_006146.1 + 101508 0.68 0.824891
Target:  5'- gUCAGGAUAugUcggaucuucaaaaCCAUgCgCCAGGGCAc -3'
miRNA:   3'- -AGUCCUGUugA-------------GGUAgGgGGUCCUGU- -5'
29070 3' -56.1 NC_006146.1 + 101098 1.08 0.003354
Target:  5'- cUCAGGACAACUCCAUCCCCCAGGACAc -3'
miRNA:   3'- -AGUCCUGUUGAGGUAGGGGGUCCUGU- -5'
29070 3' -56.1 NC_006146.1 + 99536 0.74 0.513597
Target:  5'- gUAGGGCuggAAgUCCGagCCCCCGGGGCAg -3'
miRNA:   3'- aGUCCUG---UUgAGGUa-GGGGGUCCUGU- -5'
29070 3' -56.1 NC_006146.1 + 99226 0.66 0.912427
Target:  5'- aUAGGACcuAGCUCCAgUCCuggCUCAGGAUu -3'
miRNA:   3'- aGUCCUG--UUGAGGU-AGG---GGGUCCUGu -5'
29070 3' -56.1 NC_006146.1 + 98340 0.68 0.834071
Target:  5'- cCGGGcGCGGC-CCGUCCCgguCCAGGAg- -3'
miRNA:   3'- aGUCC-UGUUGaGGUAGGG---GGUCCUgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.