miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29070 3' -56.1 NC_006146.1 + 101098 1.08 0.003354
Target:  5'- cUCAGGACAACUCCAUCCCCCAGGACAc -3'
miRNA:   3'- -AGUCCUGUUGAGGUAGGGGGUCCUGU- -5'
29070 3' -56.1 NC_006146.1 + 15280 0.67 0.857964
Target:  5'- gUAGG-UAACUUCA-CCUCCAGGGCc -3'
miRNA:   3'- aGUCCuGUUGAGGUaGGGGGUCCUGu -5'
29070 3' -56.1 NC_006146.1 + 21436 0.67 0.857964
Target:  5'- gUAGG-UAACUUCA-CCUCCAGGGCc -3'
miRNA:   3'- aGUCCuGUUGAGGUaGGGGGUCCUGu -5'
29070 3' -56.1 NC_006146.1 + 47304 0.66 0.92376
Target:  5'- cCGGGACucCUCCcgggCCUCCuGGAUg -3'
miRNA:   3'- aGUCCUGuuGAGGua--GGGGGuCCUGu -5'
29070 3' -56.1 NC_006146.1 + 50533 0.72 0.643975
Target:  5'- gUCAGGAgCcGCUCCAggUCCCGGGugGg -3'
miRNA:   3'- -AGUCCU-GuUGAGGUagGGGGUCCugU- -5'
29070 3' -56.1 NC_006146.1 + 106523 0.71 0.684512
Target:  5'- aCAGGugGGCg-CAUCCCCUgguGGGCAc -3'
miRNA:   3'- aGUCCugUUGagGUAGGGGGu--CCUGU- -5'
29070 3' -56.1 NC_006146.1 + 116212 0.69 0.760115
Target:  5'- cCAGGACAgucuGCUCCGUCCgCUugucggcgggauucGGGGCc -3'
miRNA:   3'- aGUCCUGU----UGAGGUAGGgGG--------------UCCUGu -5'
29070 3' -56.1 NC_006146.1 + 129768 0.69 0.772337
Target:  5'- gUCAGcGCAcGC-CCcUCCCCCGGGACc -3'
miRNA:   3'- -AGUCcUGU-UGaGGuAGGGGGUCCUGu -5'
29070 3' -56.1 NC_006146.1 + 93941 0.68 0.808545
Target:  5'- gCGGGGCuccgcuCUCCGUCCCaggcgaccuCCAGcGGCAg -3'
miRNA:   3'- aGUCCUGuu----GAGGUAGGG---------GGUC-CUGU- -5'
29070 3' -56.1 NC_006146.1 + 18940 0.68 0.834071
Target:  5'- cCAGGuccCAACaCCcgGUCCCCCuaguGGACAg -3'
miRNA:   3'- aGUCCu--GUUGaGG--UAGGGGGu---CCUGU- -5'
29070 3' -56.1 NC_006146.1 + 101508 0.68 0.824891
Target:  5'- gUCAGGAUAugUcggaucuucaaaaCCAUgCgCCAGGGCAc -3'
miRNA:   3'- -AGUCCUGUugA-------------GGUAgGgGGUCCUGU- -5'
29070 3' -56.1 NC_006146.1 + 133623 0.68 0.807669
Target:  5'- cCAGGGCuACUCgccaucgUAUCCCCCAuugcGGAUAc -3'
miRNA:   3'- aGUCCUGuUGAG-------GUAGGGGGU----CCUGU- -5'
29070 3' -56.1 NC_006146.1 + 99536 0.74 0.513597
Target:  5'- gUAGGGCuggAAgUCCGagCCCCCGGGGCAg -3'
miRNA:   3'- aGUCCUG---UUgAGGUa-GGGGGUCCUGU- -5'
29070 3' -56.1 NC_006146.1 + 54484 0.68 0.825734
Target:  5'- cUCAGGAUGGCgUCGUgggaggagacUCCCCAGGGCc -3'
miRNA:   3'- -AGUCCUGUUGaGGUA----------GGGGGUCCUGu -5'
29070 3' -56.1 NC_006146.1 + 139147 0.73 0.533142
Target:  5'- aCGGGG--GCUcCCGUCCCCCGGGGgGg -3'
miRNA:   3'- aGUCCUguUGA-GGUAGGGGGUCCUgU- -5'
29070 3' -56.1 NC_006146.1 + 59475 0.69 0.790724
Target:  5'- --cGGACu-CUCUAUCCCCaAGGAUAu -3'
miRNA:   3'- aguCCUGuuGAGGUAGGGGgUCCUGU- -5'
29070 3' -56.1 NC_006146.1 + 98340 0.68 0.834071
Target:  5'- cCGGGcGCGGC-CCGUCCCgguCCAGGAg- -3'
miRNA:   3'- aGUCC-UGUUGaGGUAGGG---GGUCCUgu -5'
29070 3' -56.1 NC_006146.1 + 18358 0.67 0.857964
Target:  5'- gUAGG-UAACUUCA-CCUCCAGGGCc -3'
miRNA:   3'- aGUCCuGUUGAGGUaGGGGGUCCUGu -5'
29070 3' -56.1 NC_006146.1 + 59189 0.73 0.583039
Target:  5'- uUguGGugGccuGCUCCAUCCUgCAGGGCu -3'
miRNA:   3'- -AguCCugU---UGAGGUAGGGgGUCCUGu -5'
29070 3' -56.1 NC_006146.1 + 4932 0.7 0.704558
Target:  5'- gUCGGGugGccguGCUCUGUgCCCCgGGGACc -3'
miRNA:   3'- -AGUCCugU----UGAGGUA-GGGGgUCCUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.