miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29070 3' -56.1 NC_006146.1 + 57248 0.67 0.857964
Target:  5'- aCGGGcccguggucaGCAAggCCAUCCCCCGGaGCAc -3'
miRNA:   3'- aGUCC----------UGUUgaGGUAGGGGGUCcUGU- -5'
29070 3' -56.1 NC_006146.1 + 21436 0.67 0.857964
Target:  5'- gUAGG-UAACUUCA-CCUCCAGGGCc -3'
miRNA:   3'- aGUCCuGUUGAGGUaGGGGGUCCUGu -5'
29070 3' -56.1 NC_006146.1 + 133623 0.68 0.807669
Target:  5'- cCAGGGCuACUCgccaucgUAUCCCCCAuugcGGAUAc -3'
miRNA:   3'- aGUCCUGuUGAG-------GUAGGGGGU----CCUGU- -5'
29070 3' -56.1 NC_006146.1 + 59189 0.73 0.583039
Target:  5'- uUguGGugGccuGCUCCAUCCUgCAGGGCu -3'
miRNA:   3'- -AguCCugU---UGAGGUAGGGgGUCCUGu -5'
29070 3' -56.1 NC_006146.1 + 167888 0.66 0.900158
Target:  5'- cCGGGGCGGC-CCGgggaCCCUCgcgGGGGCAc -3'
miRNA:   3'- aGUCCUGUUGaGGUa---GGGGG---UCCUGU- -5'
29070 3' -56.1 NC_006146.1 + 7080 0.67 0.872894
Target:  5'- gUCAGGAUu-CUCCAcCCUCCcuGGCAa -3'
miRNA:   3'- -AGUCCUGuuGAGGUaGGGGGucCUGU- -5'
29070 3' -56.1 NC_006146.1 + 15280 0.67 0.857964
Target:  5'- gUAGG-UAACUUCA-CCUCCAGGGCc -3'
miRNA:   3'- aGUCCuGUUGAGGUaGGGGGUCCUGu -5'
29070 3' -56.1 NC_006146.1 + 139147 0.73 0.533142
Target:  5'- aCGGGG--GCUcCCGUCCCCCGGGGgGg -3'
miRNA:   3'- aGUCCUguUGA-GGUAGGGGGUCCUgU- -5'
29070 3' -56.1 NC_006146.1 + 45976 0.67 0.865533
Target:  5'- cCGGGGCAGCUCCucgCCCCgcgugUAGGcCc -3'
miRNA:   3'- aGUCCUGUUGAGGua-GGGG-----GUCCuGu -5'
29070 3' -56.1 NC_006146.1 + 99536 0.74 0.513597
Target:  5'- gUAGGGCuggAAgUCCGagCCCCCGGGGCAg -3'
miRNA:   3'- aGUCCUG---UUgAGGUa-GGGGGUCCUGU- -5'
29070 3' -56.1 NC_006146.1 + 18358 0.67 0.857964
Target:  5'- gUAGG-UAACUUCA-CCUCCAGGGCc -3'
miRNA:   3'- aGUCCuGUUGAGGUaGGGGGUCCUGu -5'
29070 3' -56.1 NC_006146.1 + 75160 0.67 0.857964
Target:  5'- cCGGGGcCAACaCCAgcccCCCCCAcuGGGCAu -3'
miRNA:   3'- aGUCCU-GUUGaGGUa---GGGGGU--CCUGU- -5'
29070 3' -56.1 NC_006146.1 + 54484 0.68 0.825734
Target:  5'- cUCAGGAUGGCgUCGUgggaggagacUCCCCAGGGCc -3'
miRNA:   3'- -AGUCCUGUUGaGGUA----------GGGGGUCCUGu -5'
29070 3' -56.1 NC_006146.1 + 93941 0.68 0.808545
Target:  5'- gCGGGGCuccgcuCUCCGUCCCaggcgaccuCCAGcGGCAg -3'
miRNA:   3'- aGUCCUGuu----GAGGUAGGG---------GGUC-CUGU- -5'
29070 3' -56.1 NC_006146.1 + 116212 0.69 0.760115
Target:  5'- cCAGGACAgucuGCUCCGUCCgCUugucggcgggauucGGGGCc -3'
miRNA:   3'- aGUCCUGU----UGAGGUAGGgGG--------------UCCUGu -5'
29070 3' -56.1 NC_006146.1 + 50533 0.72 0.643975
Target:  5'- gUCAGGAgCcGCUCCAggUCCCGGGugGg -3'
miRNA:   3'- -AGUCCU-GuUGAGGUagGGGGUCCugU- -5'
29070 3' -56.1 NC_006146.1 + 122061 0.66 0.905177
Target:  5'- -gAGGACuuugaagccauCUUCAcCUCCCAGGACGa -3'
miRNA:   3'- agUCCUGuu---------GAGGUaGGGGGUCCUGU- -5'
29070 3' -56.1 NC_006146.1 + 168820 0.66 0.900158
Target:  5'- cCGGGGCGGC-CCGgggaCCCUCgcgGGGGCAc -3'
miRNA:   3'- aGUCCUGUUGaGGUa---GGGGG---UCCUGU- -5'
29070 3' -56.1 NC_006146.1 + 123128 0.67 0.896297
Target:  5'- cUCAGGuaGCAcggcgagaagaggccGCUCuCcgUCCCCAGGGCc -3'
miRNA:   3'- -AGUCC--UGU---------------UGAG-GuaGGGGGUCCUGu -5'
29070 3' -56.1 NC_006146.1 + 87126 0.67 0.880042
Target:  5'- aUCGGGGuCGACUgCGaccUCCCaCCAGGcCAc -3'
miRNA:   3'- -AGUCCU-GUUGAgGU---AGGG-GGUCCuGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.