miRNA display CGI


Results 41 - 60 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29070 3' -56.1 NC_006146.1 + 18940 0.68 0.834071
Target:  5'- cCAGGuccCAACaCCcgGUCCCCCuaguGGACAg -3'
miRNA:   3'- aGUCCu--GUUGaGG--UAGGGGGu---CCUGU- -5'
29070 3' -56.1 NC_006146.1 + 25911 0.66 0.918211
Target:  5'- cCAGGGCc-CUCCAgUCCagaCCCAGaGACGc -3'
miRNA:   3'- aGUCCUGuuGAGGU-AGG---GGGUC-CUGU- -5'
29070 3' -56.1 NC_006146.1 + 98340 0.68 0.834071
Target:  5'- cCGGGcGCGGC-CCGUCCCgguCCAGGAg- -3'
miRNA:   3'- aGUCC-UGUUGaGGUAGGG---GGUCCUgu -5'
29070 3' -56.1 NC_006146.1 + 27592 0.67 0.857964
Target:  5'- gUAGG-UAACUUCA-CCUCCAGGGCc -3'
miRNA:   3'- aGUCCuGUUGAGGUaGGGGGUCCUGu -5'
29070 3' -56.1 NC_006146.1 + 35060 0.67 0.865533
Target:  5'- gUCccGugGACUCUGUCCCCCuguuaGGGugGc -3'
miRNA:   3'- -AGucCugUUGAGGUAGGGGG-----UCCugU- -5'
29070 3' -56.1 NC_006146.1 + 46357 0.66 0.92376
Target:  5'- -gAGGACcGCgUCCGacagcagcUCCCCCAGGcCc -3'
miRNA:   3'- agUCCUGuUG-AGGU--------AGGGGGUCCuGu -5'
29070 3' -56.1 NC_006146.1 + 121521 0.66 0.918211
Target:  5'- gCAGGACAACggCAUCCCCguGc--- -3'
miRNA:   3'- aGUCCUGUUGagGUAGGGGguCcugu -5'
29070 3' -56.1 NC_006146.1 + 47304 0.66 0.92376
Target:  5'- cCGGGACucCUCCcgggCCUCCuGGAUg -3'
miRNA:   3'- aGUCCUGuuGAGGua--GGGGGuCCUGu -5'
29070 3' -56.1 NC_006146.1 + 16677 0.66 0.918211
Target:  5'- cCAGGGCc-CUCCAgUCCagaCCCAGaGACGc -3'
miRNA:   3'- aGUCCUGuuGAGGU-AGG---GGGUC-CUGU- -5'
29070 3' -56.1 NC_006146.1 + 111123 0.66 0.906409
Target:  5'- cCGGGuCGACacCCucaaCCCCCAGGugGc -3'
miRNA:   3'- aGUCCuGUUGa-GGua--GGGGGUCCugU- -5'
29070 3' -56.1 NC_006146.1 + 169752 0.66 0.900158
Target:  5'- cCGGGGCGGC-CCGgggaCCCUCgcgGGGGCAc -3'
miRNA:   3'- aGUCCUGUUGaGGUa---GGGGG---UCCUGU- -5'
29070 3' -56.1 NC_006146.1 + 68511 0.66 0.900158
Target:  5'- -aGGGACAGauaCCAccagcUCCCCgAGGACc -3'
miRNA:   3'- agUCCUGUUga-GGU-----AGGGGgUCCUGu -5'
29070 3' -56.1 NC_006146.1 + 87126 0.67 0.880042
Target:  5'- aUCGGGGuCGACUgCGaccUCCCaCCAGGcCAc -3'
miRNA:   3'- -AGUCCU-GUUGAgGU---AGGG-GGUCCuGU- -5'
29070 3' -56.1 NC_006146.1 + 130476 0.66 0.92376
Target:  5'- aCGGGGCcGCUgCCG--CCCCGGGugGc -3'
miRNA:   3'- aGUCCUGuUGA-GGUagGGGGUCCugU- -5'
29070 3' -56.1 NC_006146.1 + 59627 0.67 0.857964
Target:  5'- -gAGGAaaaaguGCUCCAgg-CCCAGGACAa -3'
miRNA:   3'- agUCCUgu----UGAGGUaggGGGUCCUGU- -5'
29070 3' -56.1 NC_006146.1 + 57827 0.67 0.857964
Target:  5'- cCGGGu--GCUCCAaCCUCCAGG-CAg -3'
miRNA:   3'- aGUCCuguUGAGGUaGGGGGUCCuGU- -5'
29070 3' -56.1 NC_006146.1 + 3244 0.66 0.912427
Target:  5'- gCGGGACAcGCcCCcggGUCCCCCGGcACGc -3'
miRNA:   3'- aGUCCUGU-UGaGG---UAGGGGGUCcUGU- -5'
29070 3' -56.1 NC_006146.1 + 154296 0.68 0.850193
Target:  5'- aCGGGGCuGCUCgGgUCCCUucuCGGGACGu -3'
miRNA:   3'- aGUCCUGuUGAGgU-AGGGG---GUCCUGU- -5'
29070 3' -56.1 NC_006146.1 + 123720 0.66 0.908844
Target:  5'- cUCGGGGCGGCggcgggCUcUCCCCaguaugccuccucaGGGACAg -3'
miRNA:   3'- -AGUCCUGUUGa-----GGuAGGGGg-------------UCCUGU- -5'
29070 3' -56.1 NC_006146.1 + 70795 0.66 0.900158
Target:  5'- cCGGGACcgcaGACUCCuGUCCaccguCCGGGugGa -3'
miRNA:   3'- aGUCCUG----UUGAGG-UAGGg----GGUCCugU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.