Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29070 | 5' | -51.6 | NC_006146.1 | + | 106643 | 0.66 | 0.991509 |
Target: 5'- ----cGCCUGcugcGGCCGGcUGGUCagggCCGu -3' miRNA: 3'- gaaaaUGGACu---UCGGCC-ACCAGa---GGU- -5' |
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29070 | 5' | -51.6 | NC_006146.1 | + | 71775 | 0.66 | 0.989074 |
Target: 5'- ----gGCUUGggGCUGGUGGcguuagggcuuguggCUCCc -3' miRNA: 3'- gaaaaUGGACuuCGGCCACCa--------------GAGGu -5' |
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29070 | 5' | -51.6 | NC_006146.1 | + | 49876 | 0.66 | 0.988932 |
Target: 5'- ----cACCgucggGAGGCUGG-GGUcCUCCGg -3' miRNA: 3'- gaaaaUGGa----CUUCGGCCaCCA-GAGGU- -5' |
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29070 | 5' | -51.6 | NC_006146.1 | + | 65502 | 0.66 | 0.988932 |
Target: 5'- ----gGCgUGggGCUGGUugguguggGGUCUUCAu -3' miRNA: 3'- gaaaaUGgACuuCGGCCA--------CCAGAGGU- -5' |
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29070 | 5' | -51.6 | NC_006146.1 | + | 146655 | 0.66 | 0.987435 |
Target: 5'- ----gGCCUGGaaGGuCCGGUGG-CUUCGc -3' miRNA: 3'- gaaaaUGGACU--UC-GGCCACCaGAGGU- -5' |
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29070 | 5' | -51.6 | NC_006146.1 | + | 143577 | 0.66 | 0.987435 |
Target: 5'- ----gGCCUGGaaGGuCCGGUGG-CUUCGc -3' miRNA: 3'- gaaaaUGGACU--UC-GGCCACCaGAGGU- -5' |
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29070 | 5' | -51.6 | NC_006146.1 | + | 62924 | 0.66 | 0.987435 |
Target: 5'- -cUUUGCCcu--GUCuGUGGUCUCCAg -3' miRNA: 3'- gaAAAUGGacuuCGGcCACCAGAGGU- -5' |
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29070 | 5' | -51.6 | NC_006146.1 | + | 155888 | 0.66 | 0.987435 |
Target: 5'- ----gGCCUGGaaGGuCCGGUGG-CUUCGc -3' miRNA: 3'- gaaaaUGGACU--UC-GGCCACCaGAGGU- -5' |
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29070 | 5' | -51.6 | NC_006146.1 | + | 149732 | 0.66 | 0.987435 |
Target: 5'- ----gGCCUGGaaGGuCCGGUGG-CUUCGc -3' miRNA: 3'- gaaaaUGGACU--UC-GGCCACCaGAGGU- -5' |
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29070 | 5' | -51.6 | NC_006146.1 | + | 152810 | 0.66 | 0.987435 |
Target: 5'- ----gGCCUGGaaGGuCCGGUGG-CUUCGc -3' miRNA: 3'- gaaaaUGGACU--UC-GGCCACCaGAGGU- -5' |
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29070 | 5' | -51.6 | NC_006146.1 | + | 71482 | 0.67 | 0.985785 |
Target: 5'- ----gGCCUGccguuuGGCCGGUGGUg-CCu -3' miRNA: 3'- gaaaaUGGACu-----UCGGCCACCAgaGGu -5' |
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29070 | 5' | -51.6 | NC_006146.1 | + | 43633 | 0.67 | 0.983975 |
Target: 5'- -----gUCUGugauGAGCCGGUGGguggaacgCUCCAg -3' miRNA: 3'- gaaaauGGAC----UUCGGCCACCa-------GAGGU- -5' |
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29070 | 5' | -51.6 | NC_006146.1 | + | 148244 | 0.67 | 0.979837 |
Target: 5'- ---aUGCa-GAGGCCGGUGGUUgagaauUCCu -3' miRNA: 3'- gaaaAUGgaCUUCGGCCACCAG------AGGu -5' |
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29070 | 5' | -51.6 | NC_006146.1 | + | 64656 | 0.68 | 0.973331 |
Target: 5'- ----gGCCaGggGCacgucgccgugguaGGUGGUCUCCu -3' miRNA: 3'- gaaaaUGGaCuuCGg-------------CCACCAGAGGu -5' |
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29070 | 5' | -51.6 | NC_006146.1 | + | 120223 | 0.68 | 0.972209 |
Target: 5'- ---gUGCCUGuggGGCCGG-GGUUUCg- -3' miRNA: 3'- gaaaAUGGACu--UCGGCCaCCAGAGgu -5' |
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29070 | 5' | -51.6 | NC_006146.1 | + | 77963 | 0.68 | 0.966086 |
Target: 5'- ----gGCC-GGAGCCGGUGGcCUUgGa -3' miRNA: 3'- gaaaaUGGaCUUCGGCCACCaGAGgU- -5' |
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29070 | 5' | -51.6 | NC_006146.1 | + | 98676 | 0.69 | 0.956784 |
Target: 5'- ---gUGCCUucacgcgcaguggguGggGCCGcUGGUCUCCc -3' miRNA: 3'- gaaaAUGGA---------------CuuCGGCcACCAGAGGu -5' |
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29070 | 5' | -51.6 | NC_006146.1 | + | 116604 | 0.69 | 0.955213 |
Target: 5'- ----aGCCUGAaaucauGGUC-GUGGUCUCCGu -3' miRNA: 3'- gaaaaUGGACU------UCGGcCACCAGAGGU- -5' |
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29070 | 5' | -51.6 | NC_006146.1 | + | 103842 | 0.69 | 0.955213 |
Target: 5'- ----gGCCcGucuGGCagaGGUGGUCUCCGu -3' miRNA: 3'- gaaaaUGGaCu--UCGg--CCACCAGAGGU- -5' |
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29070 | 5' | -51.6 | NC_006146.1 | + | 63648 | 0.69 | 0.955213 |
Target: 5'- ---gUGCCUGAAGgugaUGGUgcuGGUCUCCu -3' miRNA: 3'- gaaaAUGGACUUCg---GCCA---CCAGAGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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