Results 21 - 26 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29070 | 5' | -51.6 | NC_006146.1 | + | 149732 | 0.66 | 0.987435 |
Target: 5'- ----gGCCUGGaaGGuCCGGUGG-CUUCGc -3' miRNA: 3'- gaaaaUGGACU--UC-GGCCACCaGAGGU- -5' |
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29070 | 5' | -51.6 | NC_006146.1 | + | 152810 | 0.66 | 0.987435 |
Target: 5'- ----gGCCUGGaaGGuCCGGUGG-CUUCGc -3' miRNA: 3'- gaaaaUGGACU--UC-GGCCACCaGAGGU- -5' |
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29070 | 5' | -51.6 | NC_006146.1 | + | 65502 | 0.66 | 0.988932 |
Target: 5'- ----gGCgUGggGCUGGUugguguggGGUCUUCAu -3' miRNA: 3'- gaaaaUGgACuuCGGCCA--------CCAGAGGU- -5' |
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29070 | 5' | -51.6 | NC_006146.1 | + | 49876 | 0.66 | 0.988932 |
Target: 5'- ----cACCgucggGAGGCUGG-GGUcCUCCGg -3' miRNA: 3'- gaaaaUGGa----CUUCGGCCaCCA-GAGGU- -5' |
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29070 | 5' | -51.6 | NC_006146.1 | + | 71775 | 0.66 | 0.989074 |
Target: 5'- ----gGCUUGggGCUGGUGGcguuagggcuuguggCUCCc -3' miRNA: 3'- gaaaaUGGACuuCGGCCACCa--------------GAGGu -5' |
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29070 | 5' | -51.6 | NC_006146.1 | + | 106643 | 0.66 | 0.991509 |
Target: 5'- ----cGCCUGcugcGGCCGGcUGGUCagggCCGu -3' miRNA: 3'- gaaaaUGGACu---UCGGCC-ACCAGa---GGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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