Results 21 - 26 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 29070 | 5' | -51.6 | NC_006146.1 | + | 96678 | 0.69 | 0.951116 |
|
Target: 5'- ----gGCCUGAAGaaGaaGGUCUCCAg -3' miRNA: 3'- gaaaaUGGACUUCggCcaCCAGAGGU- -5' |
|||||||
| 29070 | 5' | -51.6 | NC_006146.1 | + | 96899 | 0.69 | 0.937353 |
|
Target: 5'- ----aGCgUGAGGCCguGGUGGUCaguuUCCAg -3' miRNA: 3'- gaaaaUGgACUUCGG--CCACCAG----AGGU- -5' |
|||||||
| 29070 | 5' | -51.6 | NC_006146.1 | + | 11138 | 0.7 | 0.909399 |
|
Target: 5'- ---cUACCUGggGgCGGUGGUggUCAc -3' miRNA: 3'- gaaaAUGGACuuCgGCCACCAgaGGU- -5' |
|||||||
| 29070 | 5' | -51.6 | NC_006146.1 | + | 89455 | 0.72 | 0.835401 |
|
Target: 5'- ----gGCgUGAAGCUGGUGGUUguuugCCAc -3' miRNA: 3'- gaaaaUGgACUUCGGCCACCAGa----GGU- -5' |
|||||||
| 29070 | 5' | -51.6 | NC_006146.1 | + | 42836 | 0.76 | 0.638893 |
|
Target: 5'- ---cUGCaUGAGGCCGGUGGUCUUg- -3' miRNA: 3'- gaaaAUGgACUUCGGCCACCAGAGgu -5' |
|||||||
| 29070 | 5' | -51.6 | NC_006146.1 | + | 101143 | 1.09 | 0.007866 |
|
Target: 5'- uCUUUUACCUGAAGCCGGUGGUCUCCAa -3' miRNA: 3'- -GAAAAUGGACUUCGGCCACCAGAGGU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home